Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0421 ATGGCGATTAAGCTTTCGATATGCTTCCTCTTCTTCGCATTCTCTCTCACTCAGATATTCGCTGATGAATCTAAGGAATTCGTCCTCACTTTGGATCACTCCAACTTCACTGATATCGTTAGCAAGCATGATTTCATTGTCGTCGAATTTTATGCACCTTGGTGCGGTCACTGTCAGAAGCTAGCTCCGGAGTATGAAAAGGCTGCTTCTGTCTTGAGCAGTCACGATCCTCCAATTGTTTTGGCTAAGGTTGATGCCAATGAGGCTGTGAACAAAGAAATTGCAGCTCAATTTGGTGTTCAGGGATTCCCAACAATCAAGATTCTAAGAAATGGGGGAAAGGATTCTCAAGTATACAAAGGCCCTCGTGAAGCTGATGGTATTGTGGACTATGTGAAGAGACAAAGTGGTCCTCCATCTGCTGAAATTAAATCTGCTGCTGATGCCAGTGCTTTCATTGGTGAAAGTAAAGTTGCTATTGTTGGGGTTTTTCCCGAATTCGCTGGGGATGAGTTTGAGAACTACATTGCAGTAGCAAAGAAGTTGCGTTCTGAGTACGACTTTGGCCACACCTTGGATGCCAAACTCCTTCCACGAGGAGAATCATCATTGTCTGGACCCATAGTTAGGTTATTCAAGCCATTTGATGAGCTTTTTGTTGACACCGAGGATTTCAATGTGGATGGTCTACAGAAATTCGTTGAAGACTCTAGTATCCCTGTTTTGACTGTCCTTGACACTGATCCAAAGAATCAAGCTTATATTGAAAAATTCTTTACCAGTCCCCGTACGAAGGCAATGTTCTTCATTAACTTCACTGCTGAAGGTGCTGAATCTTTGCAATCAAAATACCGTGAAGGTGCTGAGCTATATAAGAAAGACGGCATAAGCTTTTTGATTGGAGATCCTGACGTTGGTAAAAGCGTCTTAGAGTATTTTGGAGTTAACGAGGACCAAGTACCTGTAATTCTCATACTACGAGACGATAACAAGAAATTTATTAAACCCAATTTGGAGGCTGAGCACATTTCAACTTTTTTGAAGGATTTCAAGGATGGAAAGGTTTCACCACATCTGAAGTCTGAGCCTATTCCGGAATCTAACAATGAACCTGTTAAGATAGTAGTTAGGGAGACTCTTCAGGACATAGTTTTCAACTCTGGAAAGAATGTTCTTTTGGAGTTTTATGCTCCCTGGTGTGGTCATTGCAAAAAGTTGGCTCCAATATTGGATGAAGTTGCTATCTCATATCAAAGTGATGCTGATGTCGTTATCGCAAAACTGGATGCAACTGCCAACGATGTCCCAACCGAGACCTTTGATGTCCAAGGTTTTCCAACTTTGTACTTCAGGTCATCAAGTGGAAAAATATCCCAATACGACGGAGATAGGACCAAGGAAGCCATCATAGAATTCATCGAAAAGAACCGCGATAAATCTGCTCAACAAGAACAAGCAAAAGAAAAAGCAGAAGAGAAACCTGCCCAGAAAGAACAGGAAAAAGATGAGCTTTAA 1515 0.4165 MAIKLSICFLFFAFSLTQIFADESKEFVLTLDHSNFTDIVSKHDFIVVEFYAPWCGHCQKLAPEYEKAASVLSSHDPPIVLAKVDANEAVNKEIAAQFGVQGFPTIKILRNGGKDSQVYKGPREADGIVDYVKRQSGPPSAEIKSAADASAFIGESKVAIVGVFPEFAGDEFENYIAVAKKLRSEYDFGHTLDAKLLPRGESSLSGPIVRLFKPFDELFVDTEDFNVDGLQKFVEDSSIPVLTVLDTDPKNQAYIEKFFTSPRTKAMFFINFTAEGAESLQSKYREGAELYKKDGISFLIGDPDVGKSVLEYFGVNEDQVPVILILRDDNKKFIKPNLEAEHISTFLKDFKDGKVSPHLKSEPIPESNNEPVKIVVRETLQDIVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAISYQSDADVVIAKLDATANDVPTETFDVQGFPTLYFRSSSGKISQYDGDRTKEAIIEFIEKNRDKSAQQEQAKEKAEEKPAQKEQEKDEL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0421 504 ProSitePatterns Thioredoxin family active site. 392 410 IPR017937 -
Lal4g0421 504 ProSiteProfiles Thioredoxin domain profile. 350 478 IPR013766 -
Lal4g0421 504 CDD PDI_b_family 140 236 - -
Lal4g0421 504 Pfam Thioredoxin 28 133 IPR013766 -
Lal4g0421 504 Pfam Thioredoxin 373 475 IPR013766 -
Lal4g0421 504 TIGRFAM ER_PDI_fam: protein disulfide isomerase 28 504 IPR005792 GO:0003756
Lal4g0421 504 Pfam Thioredoxin-like domain 165 349 - -
Lal4g0421 504 Gene3D Glutaredoxin 366 481 - -
Lal4g0421 504 PANTHER PROTEIN DISULFIDE-ISOMERASE 6 490 - -
Lal4g0421 504 Coils Coil 473 493 - -
Lal4g0421 504 Gene3D Glutaredoxin 249 365 - -
Lal4g0421 504 TIGRFAM pdi_dom: protein disulfide-isomerase domain 32 135 IPR005788 GO:0003756
Lal4g0421 504 TIGRFAM pdi_dom: protein disulfide-isomerase domain 376 476 IPR005788 GO:0003756
Lal4g0421 504 CDD PDI_a_family 29 132 - -
Lal4g0421 504 PRINTS Thioredoxin family signature 46 54 - -
Lal4g0421 504 PRINTS Thioredoxin family signature 54 63 - -
Lal4g0421 504 PRINTS Thioredoxin family signature 99 110 - -
Lal4g0421 504 CDD PDI_b'_family 255 351 - -
Lal4g0421 504 Gene3D Glutaredoxin 137 243 - -
Lal4g0421 504 MobiDBLite consensus disorder prediction 475 504 - -
Lal4g0421 504 SUPERFAMILY Thioredoxin-like 28 138 IPR036249 -
Lal4g0421 504 SUPERFAMILY Thioredoxin-like 253 369 IPR036249 -
Lal4g0421 504 Gene3D Glutaredoxin 19 136 - -
Lal4g0421 504 SUPERFAMILY Thioredoxin-like 338 478 IPR036249 -
Lal4g0421 504 CDD PDI_a_PDI_a'_C 371 473 - -
Lal4g0421 504 PANTHER PROTEIN DISULFIDE ISOMERASE 6 490 - -
Lal4g0421 504 ProSitePatterns Thioredoxin family active site. 47 65 IPR017937 -
Lal4g0421 504 SUPERFAMILY Thioredoxin-like 141 240 IPR036249 -
Lal4g0421 504 ProSiteProfiles Thioredoxin domain profile. 5 137 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0421 Lal-Chr4 2929356 2933053 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0421 K09580 - gmx:100170705 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0421 4 2929356 2933053 Lal4g0421 4 2929356 2933053 ECH
Lal17g0476 17 3271124 3275259 Lal4g0421 4 2929356 2933053 LSH