Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0476 ATGGCGGTTAGGGTTTCGATTTGCTTCCTCTTCTTCGTCTTCGCACTCTCACTCACTCAGATCTCTGCTGATGAATCCGCTGAATCTAAGGAATTCGTTCTCACATTTGATCACTCTAATTTCTCTGATACCATTACCAAGCACGATTTCATCGTCGTCGAGTTCTATGCACCTTGGTGCGGCCACTGTAAGCAGCTTGCCCCGGAGTATGAAAAGGCTGCTTCTGCTTTGAGTAGTCATGATCCTCCAATTGTTTTGGCTAAAGTTGATGCCAATGAGGCAAAGAACAAAGACCTTGCCACTCAATATGATGTTAAAGGTTTCCCAACAATTAAGATTCTGAGAAAAGGGGGGAAGAATATTCAAGACTACAAAGGACCCCGTGAAGCAGATGGTATTGTTGACTATCTGAAGAAACAAAGCGGCCCCGCATCTTCAGAAATTAAATCTGCCGATGATGCTACTGCTTTAATTGGTGAAAATAAAATTGCTATTGTTGGGATTTTTCCTAAATTTTCTGGGGAGGAGTTTGACAACTTTATCGCAGTAGCAGAGAAGCTACGTTCTGATTACTACTTTGGGCACACCCTGGATGCCAAACACCTTCCACAGGGTGATTCATCAGTGTCTGGGCCTGCAGTTAGGTTATTCAAGCCATTTGATGAGCTTTTTGTTAACTCCCAGGATTTCAATGTGGAAGCTCTAGAGAAATTTGTTGAAGAATCTAGTAGCCCTCTTGTGACTGTCTTTAACAACGATCCAACCAATCACCCTTATGTTGTCAAATTCTTTAACAGTCCCTATGCGAAGGCAATGTTGTTCTTCAACTTCACTGCTGATGGTGTTGAATCTTTGAAATCAAAATACCGTGAAGCTGCTGAGCAATATAAGAAAGAAGGCATAAGATTTTTGATTGGAGATGTTGAGTCTAGTAAAAATGCCTTCCAGTATTTCGGACTTCAAGAAGACCAAGTACCTGTAATTGTCATACAACACAATGATGGGAAGAAATTTATTAAACCCCATTTGGAGGCTGAGCACATTTCAACTTGGTTGAAGGAATACAAGGATGGAAAGGTTGCACCACATGTGAAGTCTGAGCCTATTCCAGAATCTAACGATGAACCTGTTAAGGTTGTAGTCGGGAAGAGTCTTCAGGACATAGTTTTCAACTCTGGAAAGAATGTTTTGCTAGAGTTTTATGCTCCCTGGTGTGGTCATTGCAAACAGTTGGCTCCAATATTGGAGGAAATTGCTATCTCATATCAAAATGATGCTGATGTTATTATTGCTAAACTGGATGCAACTGCCAATGATGTCCCAAGTGATACCTTTGAAGTCCAAGGTTATCCAACTTTGTACTTCAGGTCAGCAAGTGGAAAGTTGTCACAATACGATGCCGGTAGTAGGGCCAAGGAAGACATCATAGCATTTATTGAAAAGAACCGTGATAAACCTGCTCAGCAAGAACAAGCAAAAGAACAATCAGAAGAGAAACCTGCCCAGCAAGAACAAGAAAAAGATGAGCTTTAA 1533 0.4129 MAVRVSICFLFFVFALSLTQISADESAESKEFVLTFDHSNFSDTITKHDFIVVEFYAPWCGHCKQLAPEYEKAASALSSHDPPIVLAKVDANEAKNKDLATQYDVKGFPTIKILRKGGKNIQDYKGPREADGIVDYLKKQSGPASSEIKSADDATALIGENKIAIVGIFPKFSGEEFDNFIAVAEKLRSDYYFGHTLDAKHLPQGDSSVSGPAVRLFKPFDELFVNSQDFNVEALEKFVEESSSPLVTVFNNDPTNHPYVVKFFNSPYAKAMLFFNFTADGVESLKSKYREAAEQYKKEGIRFLIGDVESSKNAFQYFGLQEDQVPVIVIQHNDGKKFIKPHLEAEHISTWLKEYKDGKVAPHVKSEPIPESNDEPVKVVVGKSLQDIVFNSGKNVLLEFYAPWCGHCKQLAPILEEIAISYQNDADVIIAKLDATANDVPSDTFEVQGYPTLYFRSASGKLSQYDAGSRAKEDIIAFIEKNRDKPAQQEQAKEQSEEKPAQQEQEKDEL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0476 510 PANTHER PROTEIN DISULFIDE-ISOMERASE 4 498 - -
Lal17g0476 510 CDD PDI_a_family 34 137 - -
Lal17g0476 510 Coils Coil 279 299 - -
Lal17g0476 510 Gene3D Glutaredoxin 246 371 - -
Lal17g0476 510 Pfam Thioredoxin 33 139 IPR013766 -
Lal17g0476 510 Pfam Thioredoxin 377 481 IPR013766 -
Lal17g0476 510 SUPERFAMILY Thioredoxin-like 148 253 IPR036249 -
Lal17g0476 510 Pfam Thioredoxin-like domain 169 353 - -
Lal17g0476 510 CDD PDI_b'_family 259 356 - -
Lal17g0476 510 ProSitePatterns Thioredoxin family active site. 52 70 IPR017937 -
Lal17g0476 510 TIGRFAM ER_PDI_fam: protein disulfide isomerase 33 510 IPR005792 GO:0003756
Lal17g0476 510 ProSiteProfiles Thioredoxin domain profile. 16 142 IPR013766 -
Lal17g0476 510 TIGRFAM pdi_dom: protein disulfide-isomerase domain 38 140 IPR005788 GO:0003756
Lal17g0476 510 ProSitePatterns Thioredoxin family active site. 397 415 IPR017937 -
Lal17g0476 510 PANTHER PROTEIN DISULFIDE ISOMERASE 4 498 - -
Lal17g0476 510 SUPERFAMILY Thioredoxin-like 33 143 IPR036249 -
Lal17g0476 510 Gene3D Glutaredoxin 372 486 - -
Lal17g0476 510 Gene3D Glutaredoxin 19 140 - -
Lal17g0476 510 MobiDBLite consensus disorder prediction 480 510 - -
Lal17g0476 510 CDD PDI_a_PDI_a'_C 376 479 - -
Lal17g0476 510 ProSiteProfiles Thioredoxin domain profile. 355 484 IPR013766 -
Lal17g0476 510 PRINTS Thioredoxin family signature 51 59 - -
Lal17g0476 510 PRINTS Thioredoxin family signature 59 68 - -
Lal17g0476 510 PRINTS Thioredoxin family signature 104 115 - -
Lal17g0476 510 CDD PDI_b_family 145 241 - -
Lal17g0476 510 SUPERFAMILY Thioredoxin-like 343 483 IPR036249 -
Lal17g0476 510 SUPERFAMILY Thioredoxin-like 243 374 IPR036249 -
Lal17g0476 510 Gene3D Glutaredoxin 141 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0476 Lal-Chr17 3271124 3275259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0476 K09580 - gmx:100170705 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0476 17 3271124 3275259 Lal4g0421 4 2929356 2933053 LSH