Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0379 ATGGCTGGCATTGGCCGTGGGAATGGGTACATAAATGGTGTACAGTCAAATAGACATCCCGCTACAATATCTGAAGTAGCTGAATTCTGCAGTGCCCTTGGTGGAAATAAGCCGATTCATAGCATATTAATTGCAAACAATGGAATGGCAGCAGTCAAGTTTATACGTAGTGTCAGGAGCTGGGCCTATGAGACATTTGGCACAGAGAAGGCTATCTTGTTGGTTGCCATGGCGACTCCAGAGGATATGAGGATCAATGCAGAACATATCAGAATAGCCGATCAATTTGTAGAAGTACCTGGTGGGACCAATAACAATAACTATGCCAATGTACAGCTTATTGTAGAGATGGCTGAGATAACTCACGTTGATGCCGTGTGGCCTGGTTGGGGTCATGCATCAGAGAATCCCGAGCTTCCTGATGCATTGAAAGAAAGAGGAATTGTATTTCTTGGTCCTCCTGCTGTATCTATGGCAGCATTGGGAGATAAAATTGGTTCGTCGTTGATTGCTCAAGCAGCGGAAGTGCCAACCCTTCCATGGAGTGGTTCTCATGTGAAAATACCTCCTGAGAATTGCATGGTTACCATTCCTGATGAAATTTATCGGGAAGCATGTGTTTATACTACAGAAGAAGCAATTGCAAGTTGTCAAGTTGTAGGATACCCTGCAATGATCAAGGCATCTTGGGGTGGTGGTGGTAAAGGCATAAGAAAGGTTCATAATGATGATGAAGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTCCCAGGCTCACCTATATTTATAATGAAGGTTGCATCCCAGAGCCGACATCTAGAAGTCCAGTTACTTTGTGATCAATATGGAAATGTTGCAGCTTTGCATAGCCGTGATTGCAGTATCCAAAGGAGGCATCAAAAGATCATTGAGGAGGGTCCCATTACTGTAGCTCCTCAGACGACGGTGAAACAACTAGAACAGGCAGCTAGAAGATTAGCGAAATCTGTAAATTATGTTGGGGCAGCTACTGTTGAGTATCTTTATAGCATGGAAACTGGTGCATACTACTTTTTAGAGTTGAACCCCCGACTACAGGTTGAGCATCCTGTTACTGAGTGGATAGCAGAGGTAAACCTGCCAGCAGCACAAGTTGCTGTTGGGATGGGTATCCCTCTCTGGCAAATTCCTGAGATAAGGCGTTTCTATGGCATGGAACATGGTGGGGGTAATGATGCTTGGAGGAAAACATCAGGTTTAGCTACTGCTTTTGATTTTGACAAGGCAGAGTCTACAAGGCCAAAAGGTCATTGTGTGGCTGTGCGAGTCACAAGTGAGGACCCTGATGATGGTTTTAAGCCTACAAGTGGGAAAGTGCAGGAGCTAAGCTTTAAAAGCAAGCCAAATGTGTGGGCATACTTCTCTGTTAAGTCTGGAGGAGGAATCCATGAATTTTCAGATTCTCAGTTTGGGCATGTTTTTGCTTTTGGAGAGTCTAGAGCTTTAGCTATTGCAAATATGGTTCTGGGGCTAAAGGAGATTCAAATTCGTGGAGAAATTCATACCAATGTTGATTACACCATTGATCTTCTGAATGCTGTAGACTACAGAGATAACAAGATTCACACAGGTTGGTTGGACAGTAGAATTGCAATGCGAGTTAGAGCAGAGAGGCCTCCCTGGTATCTTTCTGTTGTTGGAGGGGCACTCTACAAAGCTTCGGCTAGCAGTGCAGCTTTGGTTTCAGACTATGTTGGGTATCTTGAAAAGGGACAAATCCCGCCCAAGCACATATCCCTTGTCCATTCTCAAGTGTCCTTGAACATTGAAGGAAGCAAATACACGATTGACATGATACGAGGAGGATCTGGAAGTTATAGATTGAGAATGAATGAATCAGAGATAGAGGCAGAGATACATACTTTACGTGATGGAGGTTTGCTGATGCAGGCAAGTATTGTTCTCATCGGTTTTTGCAGTTTTCCCCATTACAGTAATACTCATCGATGGTCTTTTGTTCTATATCTTATTCTTGAGTTGTTAACTAGTAGTTTCAACTTCTTACAGTTGGACGGAAATAGTCATATAATATATGCAGAGGAAGAAGCAGCTGGAACACGCCTTCTAATAGATGGAAGGACATGCTTGCTTCAGAATGATCATGATCCATCAAAGTTAATTGCGGAGACACCATGCAAGCTTATGAGATATTTGGTTGTGGATGACAGTCATGTTGATGCTGACACACCATATGCTGAAGTTGAGGTCATGAAGATGTGCATGCCTCTTCTTTCGCCTGCTTCTGGGGTTATTCATTTCAAACTGTCTGAAGGTCAAGCAATGCAGGCTGGTGAACTTATAGCAAGGCTTGATCTTGATGATCCTTCAGCTGTAAGAAAGGCAGAACTTTTCAACGGGATCTTCCCAGTCCTGGGCCTTCCTACTGCAATTTCTGGTAAAATTCATCAGAAATGTGCGGCAAGCTTAAATGCTGCACGCATGATTCTTGCTGGCTATGAGCACAATATTGATGATGTCGTACAAAGTTTGCTCCATTGCCTTGATAGTCCCGAATTGCCTTTCCTTCAATGGCAAGAGTGCTTCGCTGTTCTGGCAAACCGTCTTCCCAAAGACCTGAGAAGTGAGCTGGAATCAAAATATAAGGAGTTTGAGAGGATTTCAAGCACTCAAGTTGTTGAGTTCCCTACCAAATTCTTGAAGAGAATTCTTGAAGCTCATCTTTCCTCCTGCCCTGACAAAGAAAAAGGATCTCAAGAAAGACTAGTTGAACCTCTGCTGAGTCTTGTGAAGTCTTATGATGGTGGAAGAGAGAGCCATGCCCATATAATCGTTCAATCCCTTTTTGAAGAGTATCTTTTTGTTGAAGAACTATTTAGTGATAATATACTGGCTGATGTAATTGAGCGCCTCCGCCTTCAATATAAGAAGGATCTATTGAATATTGTAGATATAGTGCTTTCTCATCAGGGTGTCAAGAGTAAAAATAAGCTGATACTGCAACTCATGGATAAACTGGTTTACCCTAACCCTGCTGCCTACAGGGATCAACTAATCCGTTTCTCTCAACTCAACCATACAAATTATTCTCAGTTGGCTCTTAAGGCAAGTCAACTTCTGGAACAAACTAAATTGAGTGAACTTCGATCCAGCATTGCCAGAAGTCTTTCTGAACTAGAGATGTTCACTGAGGATGGTGAAACTATTGATACTCCCAAGAGGAAGAGTGCTATTAATGACCGAATGGAGGACCTTGTAAGTGCTACTTTGGCAGTTGAAGATGCCCTCGTGGGTTTATTTGATCACAGCGATCACACCCTTCAAAGGAGGGTTGTGGAAACTTATATACGCAGACTCTACCAGCCATATCTTGTCAAAGGGAGTGTCAGAATGCAGTGGAACAGATCTGGTCTTATTGCTTCATGGGAGTTCTTAGAGGAGTACATTGAAAGGAAGAGTGGGGTCGAAGACCAAATGTCAGAAAAGACACCAGTGGGGAAACACGATAAGAAGAAATGGGGAGTGATGGTTATACTTAAATCTCTTCAATTTTTACCTGCAATGATAAGTGATGCCCTAAGGGAAGCAAGCAGTAACTTAAACGAAGCACTTACAAGTGAACCAATTAAGTACGGTAATATGATGCATATTGCACTGGTGGGTATCAACAACCAGATGAGTTTACTGCAAGACAGTGGTGATGAGGATCAGGCTCAAGAAAGAATAAAAAAGTTAGCCAAAATACTCAAAGATCAGGAAGTGGGCTCCACTATACGGGCAGCGGGTGTTGGAGTTATTAGCTGTATCATACAGAGGGATGAAGGGCGTGCACCGATGAGGCACTCCTTCCACTGGTCAGCAGAAAAGAACTATTATGAGGAGGAGCCTCTGTTGCGTCATTTGGAACCTCCCCTATCTATTTATCTGGAATTGGAAAAACTTAAAGCCTATGAGAATATACGGTATACACCATCTCGAGATCGTCAATGGCACCTGTACACAGTTATGGATAACAAACCACAACCAATTCAAAGAATGTTTCTTCGAACACTTCTAAGACAGCCAACCATAAATGAAGGGTTCTCTTTGTATCAAAGGCTGGATGCAGAAAAATCTCCTATCCAATTGGCTATGTCCTTCACTTCCAGGAGCATTTTTAGGTCATTGATGGCTGCAATGGAGGAGTTGGAACTTAATGCACACAATGCCAATATCAAATCTGAACATGCTCATATGTACCTCTATATCATACGCGAGCAGCAAATAGATGATCTTGTGCCTTATACAAAGAAAATTGACGTAGATGCTGCCCAAGAAGAAATAACAGTTAAAACAATCTTAGAAGGACTGGCACATGAAGTCCATTCATCTGTTGGTGTAAGAATGCATAGATTAGGGGTTGTTGTATGGGAAATCAAGCTCTGGATGGCAGCCTGTGGTCAAGCAAATGGTGCTTGGAGGGTTATTGTAAACAACGTGACAGGTCATACATGCACTGTACATATATACCGAGAAATGGAGGATACCAACACTCATCAAGTGGTATACAGTTCAGTAGGTGTAAAGGGCCCATTGCATGGTGTACCAGTGAATGAAGATTATCAATCTTTGGGAGTTATTGACCGAAAACGGCTTTCAGCGAGAAAGAACAGCACCACATACTGCTACGATTTCCCCCTGGCATTTGAAACAGCCTTGGAACAGTCATGGGCAACCCAACAGTCTGGATCTCGAAGAGCCAAAGATACAGATCTTCTAAAAGCAACAGAGCTTAAATTTGCTGACAAAGAGGGTGGTTGGGGTACTCCCCTTGTTGCTGTGGAGCGTTCTCCTGGACTGAATGACGTTGGAATGGTAGCCTGGTTAATGGAAATGTGTACCTCCGAGTTTCCATCTGGAAGAACAATATTGGTTGTAACAAATGATGTAACCTTCAAGGCTGGTTCTTTTGGACCAAGAGAGGATGCATTCTTCCGTGCAGTAACTGATCTTGCATGTGCGAAAAAACTACCTTTAATTTATTTAGCAGCAAATTCTGGTGCTCGTTTAGGTGTAGCCGAGGAAGTGAAAGCCTGTTTCAGAGTTGGTTGGTCTGAAGAATCTAGCCCTGAGCACGGTTTCCAGTATGTATATTTAACACCTGTGGATTATGCTCGGATTGAATCATCAGTGATAGCACATGAATTAAAGCTTGAAAGTGGAGAAACTAGATGGGTCATAGATACCATTGTTGGGAAAGAGGATGGTCTGGGGGTTGAAAACTTGAGTGGTAGTGGTGCCATTGCCGGTGCCTATTCAAGGGCATACCAGGAAATTTTTACATTGACATATGTGACTGGCAGGACTGTTGGAATAGGGGCTTATCTTGCCAGGCTTGGGATGAGATGCATACAGAGGCTTGATCAACCCATAATTCTTACTGGTTTTTCAGCGCTAAATAAACTTCTCGGTCGGGAGGTATACAGCTCTCACATGCAACTTGGTGGACCTAAAATCATGGCAACTAATGGAGTTGTTCACCTTACAGTTTCAGATGACCTCGAAGGTGTTTCTGCTATTTTGAAGTGGCTTAGCTACGTTCCTTCTCATGTAGGTGGTAAGCTTCCCATTTTGAAGTCCCTTGATTCTCCAGAAAGACGAGTGGAGTACTTGCCTGAAAACTCATGTGATCCTCGTGCTGCCATTGCTGGAACTATGGATGGTAATGGAAGATGGCTAGGAGGCATTTTTGACAAGGACAGCTTTGTGGAGACATTAGAAGGATGGGCAAGGACAGTTGTTACAGGAAGGGCAAAGCTTGGAGGAATTCCTGTGGGAATTGTTGCTGTAGAAACACAAACAGTAATGCAAATAATACCTGCTGATCCAGGCCAGCTTGATTCTCATGAGAGGGTTGTTCCTCAAGCCGGGCAGGTGTGGTTTCCTGATTCTGCTGCCAAGACAGCCCAATCAATATTGGATTTCAACAGAGAAGAGCTCCCACTTTTTATTCTTGCAAATTGGAGAGGCTTTTCAGGTGGGCAGAGGGACCTTTTTGAAGGAATTCTTCAAGCTGGTTCAACCATTGTAGAGAACCTTAGGACATACAAGCAGCCCATATTTGTGTACATCCCAATGATGGGCGAACTCCGTGGTGGGGCGTGGGTTGTTGTTGACAGTCGAATCAATTCAGACCACATTGAAATGTATGCCGATCGAACAGCTAAAGGCAATGTCCTGGAGCCAGAAGGAATGATTGAGATCAAATTCAGAACAAGAGAATTGTTGGAGTGCATGGGCAGACTGGATCAACAGTTGATAACTCTGAAAGCAAAACTTCAGGAGGCCAAAAGTAACAGGGAAATTGTGACCATTGAATCCCTACAGCAGCAGATTAAGTCCCGTGAGAAACAGCTTTTGCCCATGTATACCCAGATAGCTACCAAATTTGCTGAACTGCATGATACTTCCTTAAGAATGGCTGCAAAGGGGGTGGTAAGAGAAGTTTTGGACTGGGGTAACTCCCGTGCTGTCTTCTACCGAAGATTGCACAGAAGAATTGGTGAGCAGACACTGATCAACAGTTTTAGAGATGCTGCAGGTGGCGACCATTTGTCACATGTATCCGCGTTGGAATTGCTCAAAAACTTGTATCTGAACTCTGATATCGCCAAAGGTAGAGAAGATGCCTGGTTAGACGATGAAGCCTTCTTCAGATGGAAGGATAATCCTACAAACTATGAGGATAAACTAAAGGAATTGCGTGCTCAGAAAGTGTTGCTTCAACTGACAACTATTGGTGACTCAGTTCTAGATATGCAAGCTTTACCTCAAGGTCTTGCTGCCCTTTTAAGCAAGTTGGAGCCATCAAGCCGTGCGAAGTTGACGGATGAACTTCGTAAGGTACTTGGTTAG 6894 0.4336 MAGIGRGNGYINGVQSNRHPATISEVAEFCSALGGNKPIHSILIANNGMAAVKFIRSVRSWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEITHVDAVWPGWGHASENPELPDALKERGIVFLGPPAVSMAALGDKIGSSLIAQAAEVPTLPWSGSHVKIPPENCMVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSIQRRHQKIIEEGPITVAPQTTVKQLEQAARRLAKSVNYVGAATVEYLYSMETGAYYFLELNPRLQVEHPVTEWIAEVNLPAAQVAVGMGIPLWQIPEIRRFYGMEHGGGNDAWRKTSGLATAFDFDKAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIHTNVDYTIDLLNAVDYRDNKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAALVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTIDMIRGGSGSYRLRMNESEIEAEIHTLRDGGLLMQASIVLIGFCSFPHYSNTHRWSFVLYLILELLTSSFNFLQLDGNSHIIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLIAETPCKLMRYLVVDDSHVDADTPYAEVEVMKMCMPLLSPASGVIHFKLSEGQAMQAGELIARLDLDDPSAVRKAELFNGIFPVLGLPTAISGKIHQKCAASLNAARMILAGYEHNIDDVVQSLLHCLDSPELPFLQWQECFAVLANRLPKDLRSELESKYKEFERISSTQVVEFPTKFLKRILEAHLSSCPDKEKGSQERLVEPLLSLVKSYDGGRESHAHIIVQSLFEEYLFVEELFSDNILADVIERLRLQYKKDLLNIVDIVLSHQGVKSKNKLILQLMDKLVYPNPAAYRDQLIRFSQLNHTNYSQLALKASQLLEQTKLSELRSSIARSLSELEMFTEDGETIDTPKRKSAINDRMEDLVSATLAVEDALVGLFDHSDHTLQRRVVETYIRRLYQPYLVKGSVRMQWNRSGLIASWEFLEEYIERKSGVEDQMSEKTPVGKHDKKKWGVMVILKSLQFLPAMISDALREASSNLNEALTSEPIKYGNMMHIALVGINNQMSLLQDSGDEDQAQERIKKLAKILKDQEVGSTIRAAGVGVISCIIQRDEGRAPMRHSFHWSAEKNYYEEEPLLRHLEPPLSIYLELEKLKAYENIRYTPSRDRQWHLYTVMDNKPQPIQRMFLRTLLRQPTINEGFSLYQRLDAEKSPIQLAMSFTSRSIFRSLMAAMEELELNAHNANIKSEHAHMYLYIIREQQIDDLVPYTKKIDVDAAQEEITVKTILEGLAHEVHSSVGVRMHRLGVVVWEIKLWMAACGQANGAWRVIVNNVTGHTCTVHIYREMEDTNTHQVVYSSVGVKGPLHGVPVNEDYQSLGVIDRKRLSARKNSTTYCYDFPLAFETALEQSWATQQSGSRRAKDTDLLKATELKFADKEGGWGTPLVAVERSPGLNDVGMVAWLMEMCTSEFPSGRTILVVTNDVTFKAGSFGPREDAFFRAVTDLACAKKLPLIYLAANSGARLGVAEEVKACFRVGWSEESSPEHGFQYVYLTPVDYARIESSVIAHELKLESGETRWVIDTIVGKEDGLGVENLSGSGAIAGAYSRAYQEIFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSAILKWLSYVPSHVGGKLPILKSLDSPERRVEYLPENSCDPRAAIAGTMDGNGRWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSAAKTAQSILDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPMMGELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTRELLECMGRLDQQLITLKAKLQEAKSNREIVTIESLQQQIKSREKQLLPMYTQIATKFAELHDTSLRMAAKGVVREVLDWGNSRAVFYRRLHRRIGEQTLINSFRDAAGGDHLSHVSALELLKNLYLNSDIAKGREDAWLDDEAFFRWKDNPTNYEDKLKELRAQKVLLQLTTIGDSVLDMQALPQGLAALLSKLEPSSRAKLTDELRKVLG 2297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0379 2297 Coils Coil 2092 2112 - -
Lal4g0379 2297 Pfam Carboxyl transferase domain 1629 2180 IPR034733 -
Lal4g0379 2297 Gene3D Biotin dependent carboxylase carboxyltransferase 1684 1748 - -
Lal4g0379 2297 Pfam Acetyl-CoA carboxylase, central region 785 1526 IPR013537 GO:0003989|GO:0005524|GO:0006633
Lal4g0379 2297 Pfam Carbamoyl-phosphate synthase L chain, ATP binding domain 206 388 IPR005479 GO:0005524
Lal4g0379 2297 Gene3D - 164 204 - -
Lal4g0379 2297 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. 1533 1872 IPR011762 -
Lal4g0379 2297 PANTHER BNAC06G01580D PROTEIN 6 643 - -
Lal4g0379 2297 PANTHER BNAC06G01580D PROTEIN 680 2296 - -
Lal4g0379 2297 Gene3D - 1866 2266 - -
Lal4g0379 2297 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 162 400 - -
Lal4g0379 2297 Gene3D - 269 527 - -
Lal4g0379 2297 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile. 1873 2191 IPR011763 GO:0016874
Lal4g0379 2297 SUPERFAMILY Rudiment single hybrid motif 429 542 IPR011054 -
Lal4g0379 2297 Pfam Biotin carboxylase, N-terminal domain 39 158 IPR005481 -
Lal4g0379 2297 SMART Biotin_carb_C_2 434 541 IPR005482 -
Lal4g0379 2297 Pfam Biotin carboxylase C-terminal domain 435 541 IPR005482 -
Lal4g0379 2297 Gene3D - 1534 1861 - -
Lal4g0379 2297 Gene3D - 715 786 - -
Lal4g0379 2297 ProSitePatterns Carbamoyl-phosphate synthase subdomain signature 2. 352 359 IPR005479 GO:0005524
Lal4g0379 2297 ProSiteProfiles Biotin carboxylation domain profile. 38 545 IPR011764 -
Lal4g0379 2297 Gene3D - 8 163 - -
Lal4g0379 2297 SUPERFAMILY ClpP/crotonase 1533 1862 IPR029045 -
Lal4g0379 2297 CDD biotinyl_domain 720 784 - -
Lal4g0379 2297 ProSiteProfiles ATP-grasp fold profile. 191 385 IPR011761 GO:0005524|GO:0046872
Lal4g0379 2297 SUPERFAMILY PreATP-grasp domain 18 161 IPR016185 -
Lal4g0379 2297 Gene3D - 206 268 IPR013815 GO:0005524
Lal4g0379 2297 SUPERFAMILY Single hybrid motif 717 787 IPR011053 -
Lal4g0379 2297 Pfam Biotin-requiring enzyme 723 784 IPR000089 -
Lal4g0379 2297 SUPERFAMILY ClpP/crotonase 1867 2257 IPR029045 -
Lal4g0379 2297 PANTHER ACETYL-COA CARBOXYLASE, ISOFORM A 680 2296 - -
Lal4g0379 2297 PANTHER ACETYL-COA CARBOXYLASE, ISOFORM A 6 643 - -
Lal4g0379 2297 ProSitePatterns Biotin-requiring enzymes attachment site. 742 759 IPR001882 -
Lal4g0379 2297 ProSiteProfiles Biotinyl/lipoyl domain profile. 711 785 IPR000089 -
Lal4g0379 2297 Coils Coil 1386 1406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0379 Lal-Chr4 2589426 2602809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0379 9 2297 Acyl Lipid Metabolism Gene Families AT1G36160 78.397 0.0 3751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0379 K11262 - gmx:100778658 4061.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0379 4 2589426 2602809 Lal4g0379 4 2589426 2602809 ECH
Lal17g0430 17 2896816 2910448 Lal4g0379 4 2589426 2602809 LSH