Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0430 ATGGCTGGCATTGGCCGTGGGAATGGGTACATAAATGGTATACAACCAAATAAGCACCCGACTACAATATCTAATATAGCCGAGTTCTGCAGCGCCCTTGGGGGAAATAAACCAATTCATAGCATATTGATTGCAAACAATGGAATGGCAGCAGTCAAGTTTATACGTAGTGTTAGGAGCTGGGCCTATGAGACCTTTGGCACAGAGAAGGCTATCCTGTTGGTTGCCATGGCTACACCAGAGGACATGAGGATCAATGCAGAACATATTAGAATAGCTGATCAATTTGTCGAAGTACCTGGTGGGACCAATAACAATAACTATGCCAATGTACAGCTTATTGTAGAGATGGCTGAGATAACTCATGTTGATGCCGTATGGCCCGGTTGGGGTCATGCATCAGAGAATCCTGAGCTTCCTGATGCTTTGAAAGAAAAAGGAATTGTATTTCTTGGTCCTCCTGCTGTATCTATGGCAGCACTGGGAGATAAAATTGGTTCATCGTTGATTGCTCAAGCAGCGGAAGTGCCAACCCTTCCATGGAGTGGTTCTCATGTGAAAATACCTTTTGACAGTTGCTTGGTTACCATTCCTGATGAAATTTATCGGGAAGCATGTGTTTATACTACAGAAGAAGCAATTGCGAGTTGTCAAGTTGTAGGATACCCTGCAATGATCAAGGCATCTTGGGGTGGTGGTGGTAAAGGCATAAGAAAGGTTCATAATGATGATGAAGTAAGGGCATTGTTCAAGCAAGTTCAAGGCGAAGTTCCAGGCTCACCTATATTTATAATGAAGGTTGCATCGCAGAGCCGGCATCTAGAAGTCCAGTTACTTTGTGATCAATATGGAAATGTTGCAGCTTTGCATAGCCGTGATTGCAGTATTCAAAGGAGGCATCAAAAGATTATCGAGGAGGGCCCCATTACTGTAGCTCCTCCGGCAACGGTGAAACAACTAGAACAGGCAGCTAGAAGATTAGCAAAATCTGTAAATTATGTTGGTGCAGCTACTGTTGAGTATCTTTATAGCATGGAAACCGGCGAGTACTACTTTCTAGAGTTGAACCCCCGACTACAGGTTGAGCACCCGGTTACAGAGTGGATAGCAGAGATAAACCTACCAGCAGCACAAGTTGCCGTTGGGATGGGTATCCCTCTCTGGCAAATTCCTGAGATAAGGCGTTTCTATGGGGTGGAACATGGTGGGGGTAATGATGCTTGGAGGAAAACATCAGGTTTAGCTACTCCTTTTGATTTTGACAAGGTAGAATCAACAAGGCCAAAAGGTCATTGTGTGGCTGTGCGAGTCACAAGTGAGGACCCAGATGATGGTTTTAAGCCTACAAGCGGGAAAGTGCAGGAGCTAAGCTTTAAAAGCAAGCCAAATGTGTGGGCATACTTCTCTGTTAAGTCTGGAGGAGGAATCCACGAATTCTCAGATTCTCAGTTTGGGCATGTTTTTGCTTTTGGAGAATCTAGGGGTTTAGCTATTGCAAATATGGTTTTGGGTCTAAAGGAGATTCAAATTCGAGGAGAAATTCGTACCAATGTTGATTACACCATTGATCTTCTGAATGCTTCAGACTACAGAGATAACAAGATTCACACAGGGTGGCTGGACAGTAGAATTGCAATGCGGGTTAGAGCAGAGAGGCCTCCCTGGTATCTTTCTGTTGTTGGAGGGGCACTCTATAAAGCTTCTGCTTGTAGTGCAGCTTTGGTTTCAGACTATGTTGGTTATCTTGAAAAGGGACAAATCCCTCCCAAGCACTTGTCTCTTGTCCATTCTCAAGTGTCCTTGAACATAGAAGGAAGCAAATACACGATCGACATGATACGAGGAGGGTCTGGAAGTTATAGATTGAGAATGAATGAATCAGAGATAGAAGCAGAGATACATACTTTACGTGATGGAGGTTTGCTGATGCAGGCAAAGGAAGAAGCAGCTGGAACTCGCCTTCTAATAGATGGAAGGACTTGCTTACTTCAGAATGATCATGATCCATCAAAGTTAATTGCGGAGACTCCTTGCAAGCTTATGAGATATTTGGTTGTGGATGACAGTCATGTTGATGCTGACACACCATATGCTGAAGTTGAGGTCATGAAGATGTGCATGCCTCTTCTTTCGCCTGCTTCTGGAATTATTCATTTCAAAATGTCTGAAGGTCAAGCAATGCAGGCTGGTGAACTTATAGCAAGGCTTGATCTCGATGATCCTTCAGCTGTAAGAAAGGCAGAACCTTTCAATGGGAGCTTCCCTGTTCTGGGCCCTCCCACTGCAATTTCTGGTAGAGTTCATCAGAAATGTGCTGCAAGCTTAAATTCTGCACGCATGATTCTTGCTGGGTACGAGCACAATATTGATGATGTTGTACAAAGTTTGCTCCATTGCCTTGATAGTCCTGAATTGCCTTTTCTTCAATGGCAAGAGTGCTTCGCAGTTCTGGCAAATCGTCTTCCCAAAGATCTGAGAAGCGAGTTGGAATCAAAATATAAGGAGTTCGAGAGGATTTCAAGCACACAAATTGTTGATTTCCCTGCCAAATTATTGAAGGGATTTCTTGAAGCTCATCTTTCCTCTTGTCCCGACAAAGAAAAAGGAGCTCAAGAAAGATTAGTCGAACCTCTGCTGAGTCTTGTGAAGTCTTATGATGGTGGAAGAGAGAGTCATGCCCATATAATCGTTCAGTCCCTTTTTGAAGAGTATCTTTTTGTTGAAGAACTATTCAGTGATAATATACTGGCTGATGTTATTGAACGCCTCCGCCTTCAATATAAGAAAGATTTATTGAAGATTGTAGACATAGTGCTCTCTCATCAGGGTGTCAAGAGTAAAAATAAGCTGATACTGCAACTCATGGATAAACTGGTTTACCCTAACCCTGCTGCCTACAGAGATCAACTAATCCGTTTCTCTCAACTCAACCATACAAATTATTCTCAGTTGGCTCTTAAGGCAAGTCAACTGCTGGAACAAACTAAATTGAGTGAACTGCGGTCCAGCATTGCTAGAAGTCTTTCTGAACTAGAGATGTTCACCGAGGATGGTGAAACTATCGATACTCCCAAGAGGAAGAGTGCCATCAATGACCGAATGGAGGACCTTGTGAGTGCTCCTTTGGCAGTTGAAGATGCTCTTGTGGGTTTATTTGATCACAGCGATCACACCCTTCAAAGGAGGGTTGTGGAAACTTATGTACGCAGGCTCTACCAGCCATATCTTGTCAAAGGGAGTGTCAGGATGCAGTGGAACAGATCTGGTCTTATTGCTTCATGGGAGTTTTTAGAGGAGTATATTGAAGTGAAGAGTGGGGTCGAAAACCAAATGTTAGAAAAAGCACCGGTGGTGAAACACAGTGAGAAGAAATGGGGAGTGATGGTTATAATTAAATCTCTTCAATTTTTACCTGCTATGATAAGTGATGCGCTAAGGGAAGCAAGCAGTAACCTACACGAAGCACTTACAGGTGGTTCTGGCGAACCAGTTAAGTATGGTAATATGATGCATATTGCACTAGTGGGTATCAACAACCAGATGAGTTTACTGCAAGACAGTGGTGATGAGGATCAGGCTCAAGAAAGAATAAAAAAGTTAGCCAAAATTCTCAAAGATCAGGAAGTGGGTTCCACTATACGAGTTGCAGGTGTTGGAGTTATTAGCTGTATCATACAGAGGGATGAAGGGCGTGCACCGGTGAGGCACTCTTTTCACTGGTCAGCAGAAAAACACTATTATGAGGAGGAGCCTCTGTTGCGGCATTTGGAACCTCCCCTATCCATTTATCTTGAATTGGACAAACTTAAAGCCTATGAAAATATACGGTATACCCCATCTCGAGATCGTCAATGGCATCTGTACACAGTTACGGATAACAAACCACAATCAATTCAAAGAATGTTTCTTCGTACACTTCTAAGACAGCCAACCACAAATGAAGGGTTCTCTTTGTATCAAAGGCTGGATGCAGAAACATCTCGTACTCAATTGGCTATGTCCTTCACTTCCAGGAGCATTTTTAGGTCCTTGATGGCTGCAATGGAGGAGTTGGAACTTAATGCACACAATGCCAATACCAAATCTGAACATGCTCATATGTACCTATATATCATACGCCAGCAACAAATAGATGATCTTGTGCCTTACCCAAAGAGAATTGACATAGTTGATGGCCAAGAAGAAACAACAGTTGAGGCAATCTTAGAAGGACTGGCTCATGAAGTCCATTCTTCTGTTGGTGTAAGAATGCATAGATTGGGGGTTGTTGTGTGGGAAATCAAGCTCTGGATGGCAGCCTTTGGTCAGGCAAGTGGTGCTTGGAGGGTTATTGTAAACAACGTGACGGGTCATACATGCACTGTACATATATACCGAGAAATGGAGGATACCAGCACTCATAAAGTGGTATACAGTTCAGTAGGTGTAATGGGCCCGCTGCATGGTGTACCAGTGAGTGAAAATTATCAATCTTTGGGAGTTATTGACCGAAAACGTCTTTCAGCGAGAAAGAACAGCACCACATACTGCTATGATTTTCCCCTGGCATTTGAAACAGCCTTGGAACAGTCATGGGCAATCCAGCAGTCTGCATTTCAAAAAACCAAAGATACAGATCTTCTAAAAGCAACAGAGCTTAAATTTGCTGACAAAGAAGGTGGTTGGGGTACACCTCTTATTACTGTGGAGAATTCTCCTGGACTGAATGATGTTGGCATGGTAGCCTGGTTAATGGAAATGCGTACCCCTGAGTTTCCATCTGGAAGGACAATATTGGTTGTAGCAAACGATGTAACCTTCAAGGCTGGTTCTTTTGGCCCAAGAGAGGATGCATTCTTCCGTGCAGTAACTGATCTTGCATGTGAGAAAAAACTACCTTTAATTTATTTAGCAGCAAACTCTGGTGCCCGCTTAGGTGTAGCCGAGGAAGTCAAATCCTGTTTCAAAGTTGGTTGGTCTGAGGAATCTAGACCCGAGCATGGTTTTCAGTATGTATATTTAACACCTGAGGATTACGCTCGAATTGAATCATCAGTGATAGCACATGAATTAAAGCTTGAAAGTGGAGAAACCAGATGGGTCATAGATACCATTGTTGGGAAAGAGGATGGCCTAGGGGTTGAAAACTTAAGTGGTAGTGGTGCCATTGCTGGTGCCTATTCAAGGGCATACAAGGAAACTTTTACATTGACATATGTGACTGGCAGGACTGTCGGAATAGGGGCTTATCTTGCCAGGCTCGGGATGAGATGCATACAGAGGCTTGATCAGCCCATAATTCTTACCGGGTTTTCAGCGTTAAATAAACTTCTTGGTCGCGAGGTATACAGCTCCCATATGCAACTTGGTGGACCTAAAATCATGGCAACTAATGGAGTTGTTCACCTTACAGTTTCGGATGACCTTGAAGGTGTTTCCGCTATTTTGAAGTGGCTTAGCTACATTCCTTCTCATGTAGGTGGTAAGCTTCCCATTGTAAAGTCCCTTGATCCTCCGGAAAGAGAAGTGGAGTACTTGCCAGAAAACTCATGTGATCCTCGTGCTGCCATTGCTGGAACTGTGGATGGTAATGGAAGATGGCTAGGAGGCATTTTTGACAAGGACAGTTTTGTGGAGACATTAGAAGGATGGGCAAGGACAGTTGTTACAGGAAGGGCAAAGCTTGGAGGAATTCCTGTGGGAATTGTTGCCGTGGAAACACAAACGGTAATGCAAATAATACCTGCTGATCCAGGTCAGCTTGATTCTCATGAGAGGGTTGTTCCTCAAGCTGGGCAAGTGTGGTTTCCTGATTCTGCTACCAAGACAGCCCAAGCAATATTGGATTTCAACAGAGAAGAGCTCCCACTTTTCATTCTTGCAAATTGGAGAGGCTTTTCAGGTGGGCAGAGGGACCTTTTTGAAGGAATTCTTCAGGCTGGTTCAACCATTGTAGAGAACCTTAGGACATACAAGCAGCCCATATTTGTGTACATCCCAATGATGGGCGAACTCCGTGGTGGGGCGTGGGTTGTTGTTGACAGTCGAATCAATTCAGACCACATTGAAATGTATGCTGATCGAACAGCTAAAGGCAATGTCCTGGAGCCAGAAGGGATGATTGAGATCAAATTCAGAACAAGAGAATTGTTGGAGTGCATGGGTAGACTGGATCAACAGTTGATAACTCTGAAGGCAAAACTTCAGGAGGTCAAGAGTAATAGGGACATTGTGAACATCGAATCCCTACAACAGCAAATTAAGTCGCGCGAGAAACAGCTTTTGCCTGTGTATACCCAGATAGCTACCAAATTCGCGGAACTGCATGATACTTCCTTCAGAATGGCTGCAAAGGGGGTAGTAAGAGAAGTTCTGGACTGGGGTAACTCCCGTGCTGTTTTCTACCGCAGACTTCACAGGAGAATTGGTGAGCAGACATTGATCAACAGTATCAGAGATGCTGCTGGTAGTGACCATTTGTCACATGTATCCGCATTGGAATTGCTCAAGAACTTGTATCTGAATTCTGATATTGCTAAAGATAGAGAAAATGCATGGTTGGATGATGAAGCCTTCTTCAGGTGGAAGGATAATCCTGCAAACTATGAGGATAAACTAAAGGAATTGCGTGCCCAGAAAGTATTGCTTCAACTGACAAATATCAGTGACTCGGTTCTAGATTTGCAAGCTCTACCCCAAGGTCTTGCTGCCCTTTTAAGCAAGTTGGAGCCATCAAGCCGAGTGAAGTTGACCGATGAACTTCGGAAAGTACTTGGTTAG 6759 0.4369 MAGIGRGNGYINGIQPNKHPTTISNIAEFCSALGGNKPIHSILIANNGMAAVKFIRSVRSWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEITHVDAVWPGWGHASENPELPDALKEKGIVFLGPPAVSMAALGDKIGSSLIAQAAEVPTLPWSGSHVKIPFDSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSIQRRHQKIIEEGPITVAPPATVKQLEQAARRLAKSVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGVEHGGGNDAWRKTSGLATPFDFDKVESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRGLAIANMVLGLKEIQIRGEIRTNVDYTIDLLNASDYRDNKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASACSAALVSDYVGYLEKGQIPPKHLSLVHSQVSLNIEGSKYTIDMIRGGSGSYRLRMNESEIEAEIHTLRDGGLLMQAKEEAAGTRLLIDGRTCLLQNDHDPSKLIAETPCKLMRYLVVDDSHVDADTPYAEVEVMKMCMPLLSPASGIIHFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFNGSFPVLGPPTAISGRVHQKCAASLNSARMILAGYEHNIDDVVQSLLHCLDSPELPFLQWQECFAVLANRLPKDLRSELESKYKEFERISSTQIVDFPAKLLKGFLEAHLSSCPDKEKGAQERLVEPLLSLVKSYDGGRESHAHIIVQSLFEEYLFVEELFSDNILADVIERLRLQYKKDLLKIVDIVLSHQGVKSKNKLILQLMDKLVYPNPAAYRDQLIRFSQLNHTNYSQLALKASQLLEQTKLSELRSSIARSLSELEMFTEDGETIDTPKRKSAINDRMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQWNRSGLIASWEFLEEYIEVKSGVENQMLEKAPVVKHSEKKWGVMVIIKSLQFLPAMISDALREASSNLHEALTGGSGEPVKYGNMMHIALVGINNQMSLLQDSGDEDQAQERIKKLAKILKDQEVGSTIRVAGVGVISCIIQRDEGRAPVRHSFHWSAEKHYYEEEPLLRHLEPPLSIYLELDKLKAYENIRYTPSRDRQWHLYTVTDNKPQSIQRMFLRTLLRQPTTNEGFSLYQRLDAETSRTQLAMSFTSRSIFRSLMAAMEELELNAHNANTKSEHAHMYLYIIRQQQIDDLVPYPKRIDIVDGQEETTVEAILEGLAHEVHSSVGVRMHRLGVVVWEIKLWMAAFGQASGAWRVIVNNVTGHTCTVHIYREMEDTSTHKVVYSSVGVMGPLHGVPVSENYQSLGVIDRKRLSARKNSTTYCYDFPLAFETALEQSWAIQQSAFQKTKDTDLLKATELKFADKEGGWGTPLITVENSPGLNDVGMVAWLMEMRTPEFPSGRTILVVANDVTFKAGSFGPREDAFFRAVTDLACEKKLPLIYLAANSGARLGVAEEVKSCFKVGWSEESRPEHGFQYVYLTPEDYARIESSVIAHELKLESGETRWVIDTIVGKEDGLGVENLSGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSAILKWLSYIPSHVGGKLPIVKSLDPPEREVEYLPENSCDPRAAIAGTVDGNGRWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAILDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPMMGELRGGAWVVVDSRINSDHIEMYADRTAKGNVLEPEGMIEIKFRTRELLECMGRLDQQLITLKAKLQEVKSNRDIVNIESLQQQIKSREKQLLPVYTQIATKFAELHDTSFRMAAKGVVREVLDWGNSRAVFYRRLHRRIGEQTLINSIRDAAGSDHLSHVSALELLKNLYLNSDIAKDRENAWLDDEAFFRWKDNPANYEDKLKELRAQKVLLQLTNISDSVLDLQALPQGLAALLSKLEPSSRVKLTDELRKVLG 2252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0430 2252 SUPERFAMILY ClpP/crotonase 1822 2214 IPR029045 -
Lal17g0430 2252 Coils Coil 1341 1361 - -
Lal17g0430 2252 ProSiteProfiles Biotin carboxylation domain profile. 38 545 IPR011764 -
Lal17g0430 2252 Gene3D - 164 204 - -
Lal17g0430 2252 Gene3D - 1821 2221 - -
Lal17g0430 2252 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 162 400 - -
Lal17g0430 2252 Gene3D - 206 268 IPR013815 GO:0005524
Lal17g0430 2252 ProSiteProfiles Biotinyl/lipoyl domain profile. 663 737 IPR000089 -
Lal17g0430 2252 Pfam Carboxyl transferase domain 1583 2135 IPR034733 -
Lal17g0430 2252 CDD biotinyl_domain 672 736 - -
Lal17g0430 2252 Pfam Biotin carboxylase, N-terminal domain 39 158 IPR005481 -
Lal17g0430 2252 Coils Coil 2047 2067 - -
Lal17g0430 2252 Gene3D Biotin dependent carboxylase carboxyltransferase 1639 1703 - -
Lal17g0430 2252 Pfam Acetyl-CoA carboxylase, central region 737 1481 IPR013537 GO:0003989|GO:0005524|GO:0006633
Lal17g0430 2252 SUPERFAMILY ClpP/crotonase 1489 1817 IPR029045 -
Lal17g0430 2252 ProSiteProfiles ATP-grasp fold profile. 191 383 IPR011761 GO:0005524|GO:0046872
Lal17g0430 2252 ProSitePatterns Carbamoyl-phosphate synthase subdomain signature 2. 352 359 IPR005479 GO:0005524
Lal17g0430 2252 SMART Biotin_carb_C_2 434 541 IPR005482 -
Lal17g0430 2252 PANTHER ACETYL-COA CARBOXYLASE, ISOFORM A 6 2251 - -
Lal17g0430 2252 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile. 1831 2146 IPR011763 GO:0016874
Lal17g0430 2252 PANTHER BNAC06G01580D PROTEIN 6 2251 - -
Lal17g0430 2252 ProSitePatterns Biotin-requiring enzymes attachment site. 694 711 IPR001882 -
Lal17g0430 2252 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. 1488 1827 IPR011762 -
Lal17g0430 2252 SUPERFAMILY Single hybrid motif 669 739 IPR011053 -
Lal17g0430 2252 Pfam Biotin carboxylase C-terminal domain 435 541 IPR005482 -
Lal17g0430 2252 SUPERFAMILY PreATP-grasp domain 19 161 IPR016185 -
Lal17g0430 2252 Gene3D - 269 527 - -
Lal17g0430 2252 SUPERFAMILY Rudiment single hybrid motif 429 542 IPR011054 -
Lal17g0430 2252 Pfam Biotin-requiring enzyme 675 736 IPR000089 -
Lal17g0430 2252 Gene3D - 1489 1816 - -
Lal17g0430 2252 Pfam Carbamoyl-phosphate synthase L chain, ATP binding domain 206 388 IPR005479 GO:0005524
Lal17g0430 2252 Gene3D - 667 738 - -
Lal17g0430 2252 Gene3D - 9 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0430 Lal-Chr17 2896816 2910448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0430 5 2252 Acyl Lipid Metabolism Gene Families AT1G36160 79.823 0.0 3763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0430 K11262 - gmx:100778658 4105.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0430 17 2896816 2910448 Lal17g0430 17 2896816 2910448 ECH
Lal17g0430 17 2896816 2910448 Lal4g0379 4 2589426 2602809 LSH