Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0345 ATGGGTAGCTTCGACTCTTTCTCTTACCTGACACAACGTGAAGCTGTTGAGGTTGATGAATTGCTCATGGGTCCTCTTGGTTTCAGCGTGGACCAGCTCATGGAATTGGCTGGTTTAAGCGTTGCTACTTCCATAGCTGAGGTTTACAAACCAAGTGACTATAGTCGTGTTCTTACAATTTGTGGTCCTGGTAACAATGGTGGTGACGGTCTGGTGGCTGCCCGTCACCTACATCATTTTGGTTATAAGCCCTTGGTCTGCTACCCAAAGCGTACACAGAATCCTCTGTATGCTGGATTAGTTACTCAGCTCGAAGCACTGTCAATCCCATTCCTGTCAGTGGAAGATCTTCCGTCAGACTTGTCAAATGACTTTGACATTGTAGTAGATGCGATGTTCGGATTCTCATTTCATGGTTCTCCAAGGCCACCTTTTGATGATTTGGTTCATAGATTTGTTTCTTTACATAATCAAATTGGCCAAAAAAGATCAGTTATAATCTCTATAGATATTCCTTCTGGGTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGGCATTAAACCTGATATGTTGGTTTCTTTGACAGCCCCAAAATTATGTGCAAAGAAGTTTATTGGTCCTCACCACTTCCTAGGAGGTAGATTTGTCCCACCTGCTATTGTAGAAAAATATAAGCTTGTACTTCCACCATATTCTGGAACTTCCATGTGTGTACGAATCGGAAAGCCTCCTCAAATTGATATTTCAGCTCTGAGAGAGAATTATATCTCTCCTGAGTTTCTTGAAGAGCAGGTGGAGGCAGACCCCATTAATCAGTTTCGTAAATGGTTTGATGATGCGTTGGCTGCTGGGTTGAAGGAACCAAATGCTATGGCCTTGTCAACTGCAGGGAAGGATGGAAAACCCTCATCACGGATAGTATTGCTAAAAGGTGTGGATAAAGATGGATTTGTGTGGTACACAAATTTTGAAAGTCGAAAGGCACGTGAATTGTCTGAAAATACTCATGCATCACTTCTTTTTTACTGGGATGATCTAAACCGGCAGGTAAGGGTGGAGGGGTCTGTTCAGAAAGTATCTGATGAGAAATCGAAGCAGTATTTTCATAGCCGTCCTAGAGGAAGTCAGATTGGAGCAATAGTCAGCAAGCAGAGTTCTGTTGTGCCTGGAACTGGAAGGCATGTTCTTCATCAGGAGTACAAAGAGCTTGAACAAAAATATGCTGATCAAAGTTTGATACCTAAACCTAAGAACTGGGGAGGATACAGGCTAATACCAAATGCTTTTGAGTTTTGGCAAGGGCAGAAATCTCGCTTGCATGACAGGCTGCGATATTCTCCCCATGAGGTCAATGATCAACGGCTATGGAAGGTTGAGCGGTTAGCCCCCTGA 1395 0.4337 MGSFDSFSYLTQREAVEVDELLMGPLGFSVDQLMELAGLSVATSIAEVYKPSDYSRVLTICGPGNNGGDGLVAARHLHHFGYKPLVCYPKRTQNPLYAGLVTQLEALSIPFLSVEDLPSDLSNDFDIVVDAMFGFSFHGSPRPPFDDLVHRFVSLHNQIGQKRSVIISIDIPSGWHVEEGDVDGTGIKPDMLVSLTAPKLCAKKFIGPHHFLGGRFVPPAIVEKYKLVLPPYSGTSMCVRIGKPPQIDISALRENYISPEFLEEQVEADPINQFRKWFDDALAAGLKEPNAMALSTAGKDGKPSSRIVLLKGVDKDGFVWYTNFESRKARELSENTHASLLFYWDDLNRQVRVEGSVQKVSDEKSKQYFHSRPRGSQIGAIVSKQSSVVPGTGRHVLHQEYKELEQKYADQSLIPKPKNWGGYRLIPNAFEFWQGQKSRLHDRLRYSPHEVNDQRLWKVERLAP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0345 464 Gene3D - 7 246 IPR036652 -
Lal4g0345 464 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 420 464 IPR019576 -
Lal4g0345 464 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 255 464 IPR000659 GO:0004733|GO:0008615|GO:0010181
Lal4g0345 464 PANTHER NAD(P)H-HYDRATE EPIMERASE 2 449 - -
Lal4g0345 464 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 14 204 IPR004443 -
Lal4g0345 464 Hamap NAD(P)H-hydrate epimerase [nnrE]. 11 244 IPR004443 -
Lal4g0345 464 SUPERFAMILY YjeF N-terminal domain-like 8 236 IPR036652 -
Lal4g0345 464 Pfam YjeF-related protein N-terminus 31 201 IPR004443 -
Lal4g0345 464 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 430 443 IPR019740 GO:0016638
Lal4g0345 464 ProSiteProfiles YjeF N-terminal domain profile. 15 229 IPR004443 -
Lal4g0345 464 Gene3D - 256 456 IPR012349 -
Lal4g0345 464 SUPERFAMILY FMN-binding split barrel 261 464 - -
Lal4g0345 464 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 245 464 IPR000659 GO:0004733|GO:0008615|GO:0010181
Lal4g0345 464 Pfam Pyridoxamine 5'-phosphate oxidase 278 363 IPR011576 -
Lal4g0345 464 PANTHER NAD(P)H-HYDRATE EPIMERASE 2 449 IPR032976 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0345 Lal-Chr4 2308994 2320397 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0345 K23998 - gmx:100795497 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0345 4 2308994 2320397 Lal4g0345 4 2308994 2320397 ECH
Lal21g0464 21 3301332 3307577 Lal4g0345 4 2308994 2320397 LSH