Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0464 ATGATGCTTTCATTGTTGAAGGGAACAAGAACCATGACATGTCTCTACCTTACCCATTCATTCACCTTAACCCATAAAAACACATACCCATTTCCTTCTTCAAACAACCCTTTCTTTCAATTCTTCTCTGGTTTTCTCAGGCCTCAGTTTCGTGCACTATCTACCAAGTTCAGTGGGGTGTCACAAACTATGGGGAGTTTTGACTCTTTGTCTTACCTTACGCAAAGTGAAGCTGCTGAGGTTGATGAATCACTCATGGGTCCTCTTGGATTTAGCGTTGATCAGCTCATGGAATTGGCTGGTTTGAGCGTTGCTACGTCCATAGCTGAGGTTTACAAACCAAGTGAGTATAGTCGTGTTCTTACATTTTGTGGTCCTGGTAATAATGGTGGTGACGGTCTTGTGGCTGCCCGTCACCTACATCATTTTGGTTATAAGCCCTTGGTCTGCTACCCGAAGCGTACCCAGAAGCCTCTGTATGCTGGGTTAGTTACCCAGCTCGAAGCACTGTCAATCCCATTCCTTTCAGTGGAAGATCTACCGTCAGACTTGTCAAATGACTTTGACGTTCTAGTAGATGCGATGTTTGGATTCTCGTTTCATGGCTCTCCAAGGCCTCCTTTTGATGATTTGATTCATAGATTTGTTTCAATACATAATCATAATCAAACTGGCCAAAAAAGATCAGTTATAGTCTCTATAGATATTCCTTCTGGGTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGGCATTAAACCAGATATGTTGGTTTCTCTGACAGCGCCAAAATTATGTGCGAAGAAGTTTATCGGTCCACACCACTTCCTAGGAGGTAGATTTGTCCCACCTGTTATTGCAGAAAAATATAACCTTGTACTTCCACCATATCCTGGAACTTCCATGTGTGTCCGAATCGGAAAGCCTCCTCAAATTGATATTTCAGCTATGAGAGAGAATTATATCTCTCCTGAGTTTCTTGAAGAGGAGGCGGAGGCAGACCCCATTAATCAGTTTCATAAATGGTTTGGTGATGCGTTGGCTGTTGGGTTGAAGGAACCGAATGCTATGGCCTTGTCAACTGTAGGGAAGGATGGAAAACCCTCATCACGAATGGTATTGCTAAAAGGTGTTGACAAAAATGAATTTGTGTGGTACACAAATTATGAAAGTCAAAAGGCGCGTGAGTTATCCGAAAATCCTTATGCTTCACTTCTTTTTCATTGGGATGGTCTAAACCGGCAGGTACGGGTGGAGGGGTATGTACAGAAAGTCTCTGATGAGGAATCGGAGCAGTATTTCCATAGCCGTCCTAGAGGAAGTCAGATCGGAGCAATAGTCAGCAAGCAGAGTACTGTTGTACCTGGAAGGCATGTTCTTCATCAGAAGTACAAAGAACTTGAGCAAAAATATGCTGATGGAAGTTTGATCCCTAAACCTAAGAACTGGGGAGGATACAGGCTAACACCACACGCTTTTGAGTTTTGGCAAGGACAGAAATCTCGCTTGCATGACAGGCTGAGATATTCTCCCTGTGAGATCAATGAACAGAAGGTGTGGAAGGTTGAACGGTTAGCCCCTTGA 1584 0.4356 MMLSLLKGTRTMTCLYLTHSFTLTHKNTYPFPSSNNPFFQFFSGFLRPQFRALSTKFSGVSQTMGSFDSLSYLTQSEAAEVDESLMGPLGFSVDQLMELAGLSVATSIAEVYKPSEYSRVLTFCGPGNNGGDGLVAARHLHHFGYKPLVCYPKRTQKPLYAGLVTQLEALSIPFLSVEDLPSDLSNDFDVLVDAMFGFSFHGSPRPPFDDLIHRFVSIHNHNQTGQKRSVIVSIDIPSGWHVEEGDVDGTGIKPDMLVSLTAPKLCAKKFIGPHHFLGGRFVPPVIAEKYNLVLPPYPGTSMCVRIGKPPQIDISAMRENYISPEFLEEEAEADPINQFHKWFGDALAVGLKEPNAMALSTVGKDGKPSSRMVLLKGVDKNEFVWYTNYESQKARELSENPYASLLFHWDGLNRQVRVEGYVQKVSDEESEQYFHSRPRGSQIGAIVSKQSTVVPGRHVLHQKYKELEQKYADGSLIPKPKNWGGYRLTPHAFEFWQGQKSRLHDRLRYSPCEINEQKVWKVERLAP 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0464 527 SUPERFAMILY YjeF N-terminal domain-like 71 301 IPR036652 -
Lal21g0464 527 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 76 269 IPR004443 -
Lal21g0464 527 PANTHER NAD(P)H-HYDRATE EPIMERASE 64 512 IPR032976 -
Lal21g0464 527 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 320 527 IPR000659 GO:0004733|GO:0008615|GO:0010181
Lal21g0464 527 SUPERFAMILY FMN-binding split barrel 329 527 - -
Lal21g0464 527 Gene3D - 67 306 IPR036652 -
Lal21g0464 527 Pfam Pyridoxamine 5'-phosphate oxidase 346 429 IPR011576 -
Lal21g0464 527 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 310 527 IPR000659 GO:0004733|GO:0008615|GO:0010181
Lal21g0464 527 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 483 527 IPR019576 -
Lal21g0464 527 Pfam YjeF-related protein N-terminus 94 266 IPR004443 -
Lal21g0464 527 ProSiteProfiles YjeF N-terminal domain profile. 78 314 IPR004443 -
Lal21g0464 527 Gene3D - 321 518 IPR012349 -
Lal21g0464 527 PANTHER NAD(P)H-HYDRATE EPIMERASE 64 512 - -
Lal21g0464 527 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 493 506 IPR019740 GO:0016638
Lal21g0464 527 Hamap NAD(P)H-hydrate epimerase [nnrE]. 74 309 IPR004443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0464 Lal-Chr21 3301332 3307577 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0464 K23998 - gmx:100795497 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0464 21 3301332 3307577 Lal21g0464 21 3301332 3307577 ECH
Lal21g0464 21 3301332 3307577 Lal4g0345 4 2308994 2320397 LSH