Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0310 ATGGCCTCATTTCGTCGCACCCTTTCTCCAGCGTATCACGATCGCCACCACCACAACGGCGTCGTTTCTATTTCTTCCCCTTCTCACAAACTCTTCTCCCCCAAATACACCTCCCCATTACCGGCACTCTTCACGCGCGTCGCTGGCGCGTTCTCCAAACGCTATGCCCGAAAGTCCAAGTGGAGAAAAACTCTATTCCGTTGCTTCCTCTTTTTCTTCGTTGGTTTCTTACTAGGCATCTTCCCCTTCGGCCACGTGGCAGTCGACGAAGACATTAACATCAAGCCACCACCACGCGCCACCACCACTACCGCCAACATCATCAAAGCTCAATTTCCTCCACAAGACGTAGCTGCTTTCACAATCGATCCACTGAGCTTGACCGTAGAGAATCACAACTCAGAGGCAGTTACCAATTTTAGATTCGATTTCGTGCCGAGAAAACAGTTAATTGTGGTTACTCCGACCTACAACCGCGCGTTTCAGGCTTATTTCTTGAACCGGTTAGGTCAAGTGCTCCGATTGGTTCCTCCACCGGTTCTGTGGATTGTGGTTGAAATGAACCCGGCTTCGACGAAGACGGCTGAATTGTTGAGGAAAACCGGTGTAATGTATAGGCATTTAGTGTGCACTAAGAATTCCACTGATGTGAAGGATAGAGGGGTTCATCAGAGGAATACTGCATTGGAACACATCGAAAATCATCGATTAAATGGCATTGTTTACTTTGCAGATGATGATAATATATATTCTCTACCTTTGTTTGAGACCATGAGACACATAAGTGGCTTTGGTACTTGGCCTGTTGCGATGCTTGCACCAAGCAAGAACAAGGCTATTTTAGAAGGTCCTGTGTGCAATGGAAGTCAAGTGATTGGATGGCACACAAATGAGAGAAGTAAAAAACTTCGTAGGTTTCATGTTGATATGTCCGGATTTGCTTTTAACAGCACAATTTTGTGGGATCCAAAGACGTGGCGACGCCCTACTTCAAATCCTATTCGACAGTTGGACACAGTAAAGGAGGGTTTTCAAGAGACCACCTTTATAGAGCAATTGGTGGAAGATGAGAGTCACATGGAAGGTTCACCTCCTGGTTGTTCCAGTATAATGAATTGGCATCTTCATTTGGATTCTCATAATGAAGTGTATCCAAAGGGTTGGCTGCTACCAAAAAACTTAGATGCTGTCATTCCCGCCAAGTAA 1206 0.4577 MASFRRTLSPAYHDRHHHNGVVSISSPSHKLFSPKYTSPLPALFTRVAGAFSKRYARKSKWRKTLFRCFLFFFVGFLLGIFPFGHVAVDEDINIKPPPRATTTTANIIKAQFPPQDVAAFTIDPLSLTVENHNSEAVTNFRFDFVPRKQLIVVTPTYNRAFQAYFLNRLGQVLRLVPPPVLWIVVEMNPASTKTAELLRKTGVMYRHLVCTKNSTDVKDRGVHQRNTALEHIENHRLNGIVYFADDDNIYSLPLFETMRHISGFGTWPVAMLAPSKNKAILEGPVCNGSQVIGWHTNERSKKLRRFHVDMSGFAFNSTILWDPKTWRRPTSNPIRQLDTVKEGFQETTFIEQLVEDESHMEGSPPGCSSIMNWHLHLDSHNEVYPKGWLLPKNLDAVIPAK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0310 401 PANTHER GLYCOSYLTRANSFERASES 1 398 - -
Lal4g0310 401 SUPERFAMILY Nucleotide-diphospho-sugar transferases 149 394 IPR029044 -
Lal4g0310 401 CDD GlcAT-I 150 378 IPR005027 GO:0015018|GO:0016020
Lal4g0310 401 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 398 IPR005027 GO:0015018|GO:0016020
Lal4g0310 401 Pfam Glycosyltransferase family 43 169 377 IPR005027 GO:0015018|GO:0016020
Lal4g0310 401 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 149 387 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0310 Lal-Chr4 2009990 2013808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0310 1 401 Glycosyltransferase AT1G27600 60.096 7.07e-176 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0310 K20869 - gmx:100789348 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0310 4 2009990 2013808 Lal4g0310 4 2009990 2013808 ECH
Lal17g0348 17 2262891 2266001 Lal4g0310 4 2009990 2013808 LSH