Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0348 ATGGCGTCATTTCGTAGGACTCTGTCGCCGGCGTATCACGATCGCCACCATCACAACGGCGTCGTTTCAGTTTCTTCCCCTTCTCACAAATTCTCCCCCAATAGCAACAATTACTCCAAATTGACCTCTCCATTACACGCGCTGCTCGCGCGCGTAGCAGGCGCGTTTGCTAAACGATACGGCCGGAAAGGCCAGTGGAGGAAAACGCTCTTCCGTTGCTTGCTATTTTTCTTCGTCGGTTTCTTACTAGGCATGTTCCCGTTCGGCCACGTGGCAGTTAACGACGACATAGAGATCAAGACACCACGCGCCTCTACCATTTCCAACAAAGCTCAATTACCTAGGGACGAAGAAACCGATTTCACAATCGATCCAGTGAGATTGACCGCAGAGAATCACGTCTCAGAGGCAGTTACTAATTTCAGATTCGATTTCGCACCGAGAAAACAGTTAATTGTGGTTACTCCGACCTACAACCGCGCGTTTCAGGCTTATTTCCTGAACCGGTTGGGTCAGGTGCTCCGTTTGGTTCCTCCTCCGGTTCTCTGGATTGTGGTTGAAATGAACTCGGCTTCGATGGAAACCGCTGAATTGTTGAGGAAAAGTGGTGTAATGTATAGGCATTTGATTTGTACTAAGAACTCCACTGATGTGAAAGATAGAGGGGTTCATCAGAGAAATTCTGCTTTGGAACACATCGAACATCATCGACTTAATGGCATTGTTTACTTTGCAGATGATGATAATATATATTCCCTACATTTGTTTGAGACCCTGAGACACATAAGTGGCTTTGGTACTTGGCCTGTTGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAAGGTCCCGTATGCAATGGAAGCCAAGTGATTGGATGGCACACAAATGAGAAAAGTAAAAGACTTCGTAGGTTTCATGTTGATATGTCTGGATTTGCTTTTAACAGCACAATTTTGTGGGATCCAAAGACATGGCGACGCCCTACCTCAAATCCTATTCGACAGTTGGATACATTGAAGGAGGGTTTTCAAGAGACCACCTTTATAGAACAATTGGTGGAAGATGAGAGTCACATGGAAGGTTCACCTCCTGGTTGTTCCAATATAATAAATTGGCATCTCCATTTGGATTCTCATAATGTTGTTTATCCAAAGGGTTGGCTGCTACAGAAAAACTTAGATGCTGTCTTCCCCACCAAGTAA 1209 0.4533 MASFRRTLSPAYHDRHHHNGVVSVSSPSHKFSPNSNNYSKLTSPLHALLARVAGAFAKRYGRKGQWRKTLFRCLLFFFVGFLLGMFPFGHVAVNDDIEIKTPRASTISNKAQLPRDEETDFTIDPVRLTAENHVSEAVTNFRFDFAPRKQLIVVTPTYNRAFQAYFLNRLGQVLRLVPPPVLWIVVEMNSASMETAELLRKSGVMYRHLICTKNSTDVKDRGVHQRNSALEHIEHHRLNGIVYFADDDNIYSLHLFETLRHISGFGTWPVAMLAPSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKTWRRPTSNPIRQLDTLKEGFQETTFIEQLVEDESHMEGSPPGCSNIINWHLHLDSHNVVYPKGWLLQKNLDAVFPTK 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0348 402 CDD GlcAT-I 151 379 IPR005027 GO:0015018|GO:0016020
Lal17g0348 402 Pfam Glycosyltransferase family 43 170 378 IPR005027 GO:0015018|GO:0016020
Lal17g0348 402 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 150 394 IPR029044 -
Lal17g0348 402 PANTHER GLYCOSYLTRANSFERASES 1 399 - -
Lal17g0348 402 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 399 IPR005027 GO:0015018|GO:0016020
Lal17g0348 402 SUPERFAMILY Nucleotide-diphospho-sugar transferases 150 395 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0348 Lal-Chr17 2262891 2266001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0348 1 402 Glycosyltransferase AT1G27600 61.125 9.67e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0348 K20869 - gmx:100809892 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0348 17 2262891 2266001 Lal17g0348 17 2262891 2266001 ECH
Lal17g0348 17 2262891 2266001 Lal4g0310 4 2009990 2013808 LSH