LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal4g0275	ATGGGGCCACCGGTTAGTTATGAAAGAAATAGTTGTTCATCTTTTTCTGATCGCAGACTCAACATTCTCGCAAATCACTTTGTTACTGTTAATAACCATTCAATGGATTCTCTTAATCATAACATTTCTCCTTCTCCAACCTCTTCTTCTCATTCCGTTTTTGATCATCTTCTTCGTGCTCCTGAAGATCCTATTCTCGGAGTTACTGTTGCATACAACAAAGATCCAAGCCCTGTTAAGCTTAACTTAGGTGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGAAACTCGTCAATGAAGCGTCACGAAACAAGGAATATCTTCCGATTGTCGGGGTCGCGGATTTTAACAAATTGAGTGCTAGGCTAATTTTTGGTGCTGATAGCCCTGCTATTCAACAGAACAGGGTTACCACTGTTCAATGCTTGTCTGGTACTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAGACACTATCACCAAAGGACTATATATGTGCCTCAGCCAACTTGGGGCAATCACCCTAAGATTTTCACCTTAGCAGGGTTATCTGTCAAAACATATCGCTATTATGCTCCGACAACAAAAGGACTTGACTTTCAAGGACTTCTCGAAGATCTTGGTTCTGCTCCATCTGGATCTGTTGTTTTGCTACATGCATGCGCACATAACCCTACTGGTGTTGATCCAACCCCTGAGCAATGGGAGCGCATTAGGCAGCTGATCAGATCAAAAGCTTTGTTACCTTTCTTTGACAATACAGATGCACAGCCTGTTCGCATGTTTGTTGCTGATGGGGGCGAATTGCTGGTCGCTCAGAGTTATGCAAAGAACATGGGTCTTTATGGAGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCCGCTGACGTTGCAAGCAGAGTCGAAAGCCAGGTGAAACTTGTGGTTAGGCCAATGTACTCAAATCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAGGGACAGGGATTTGTACAATGAGTGGACCATTGAGTTGAAGGCAATGGCTGATCGCATTATCAACATGCGCCAACAACTTTTTGATGCTTTGCGTTCCAGAGGTACACCTGGTGATTGGAGTCACATTATCAAGCAGATTGGAATGTTTACTTTCACAGGATTGAATGCTGACCAAGTTTCCTTCATGACTAAAGAGTACCATATATACATGACATTTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACAGTCCCTCATCTTGCTGATGCCATAGATGCAGCTGTAACCCGAGCTGTCTAA	1332	0.4392	MGPPVSYERNSCSSFSDRRLNILANHFVTVNNHSMDSLNHNISPSPTSSSHSVFDHLLRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQKLVNEASRNKEYLPIVGVADFNKLSARLIFGADSPAIQQNRVTTVQCLSGTGSLRVGGEFLARHYHQRTIYVPQPTWGNHPKIFTLAGLSVKTYRYYAPTTKGLDFQGLLEDLGSAPSGSVVLLHACAHNPTGVDPTPEQWERIRQLIRSKALLPFFDNTDAQPVRMFVADGGELLVAQSYAKNMGLYGERVGALSIVCKSADVASRVESQVKLVVRPMYSNPPIHGASIVAAILRDRDLYNEWTIELKAMADRIINMRQQLFDALRSRGTPGDWSHIIKQIGMFTFTGLNADQVSFMTKEYHIYMTFDGRISMAGLSSKTVPHLADAIDAAVTRAV	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal4g0275	443	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	286	299	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Lal4g0275	443	Pfam	Aminotransferase class I and II	80	435	IPR004839	GO:0009058\|GO:0030170
	Lal4g0275	443	SUPERFAMILY	PLP-dependent transferases	51	441	IPR015424	-
	Lal4g0275	443	PANTHER	ASPARTATE AMINOTRANSFERASE	51	442	-	-
	Lal4g0275	443	Gene3D	-	113	343	IPR015421	GO:0003824
	Lal4g0275	443	PRINTS	Aspartate aminotransferase signature	228	247	IPR000796	GO:0006520\|GO:0008483
	Lal4g0275	443	PRINTS	Aspartate aminotransferase signature	316	341	IPR000796	GO:0006520\|GO:0008483
	Lal4g0275	443	PRINTS	Aspartate aminotransferase signature	384	402	IPR000796	GO:0006520\|GO:0008483
	Lal4g0275	443	CDD	AAT_like	81	423	-	-
	Lal4g0275	443	Gene3D	Aspartate Aminotransferase, domain 1	59	435	IPR015422	GO:0003824
	Lal4g0275	443	PANTHER	ASPARTATE AMINOTRANSFERASE	51	442	IPR000796	GO:0006520\|GO:0008483

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal4g0275	Lal-Chr4	1766122	1770289	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal4g0275	K14454		-	gmx:547509	731.865

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal4g0275	4	1766122	1770289	Lal4g0275	4	1766122	1770289	ECH
	Lal21g0406	21	2816499	2821389	Lal4g0275	4	1766122	1770289	LSH