Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0406 ATGCGCCCACAGAGTAATAACACTTGTATTAATAATACTTCTTATTTTTCTTCTTCTTCTTGTTCCATCGATCGTAGAATAACTACTCTTTCAAGACATCTTCTTAATCATCAAATGGCTTCTGTTGATTCCATTTCCGTTTCTCCAACCGCTTCTTCCGATTCCGTTTTCGCTCATCTTCTTCCTGCTCCTGAAGATCCTATTCTCGGAGTGACTGTGGCTTACAACAAAGATCCAAGTCCAGTTAAGCTCAATTTAGGTGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTCTGAATGTAGTGAGGCGTGTTGAACAGCAACTTGTGAATGAAGCGTCACGCAACAAGGAGTATCTTCCAATTGTCGGGGTCGCCGATTTCAACAAATTGAGTGCTAGGCTCATTTTTGGTGCTGACAGCCCTGCTATTAAAGAGAACAGGGTGACCACTGTTCAATGCTTGTCTGGTACTGGTTCATTAAGAGTTGGGGGTGAATTTCTAGCTAGACACTATCACCAAAAGACTATATACTTGCCTCAACCAACTTGGGGAAATCACCCAAAGATTTTCAACTTAGCAGGGTTATCTGTCAAAACATATCGCTATTATGCTCCGGCAACAAGAGGGCTTGACTTTGAAGGACTCCTAGAAGATCTTGGTTCTGCCCCATCTGGATCCATTGTTTTGCTACATGCATGCGCACATAACCCTACTGGTGTTGATCCAACCCCTGAGCAATGGGAGCAGATTAGGCAGCTGTTGAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTACCAGGGCTTTGCTAGTGGAAGTCTAGATGTAGATGCACTGCCTGTTCGTTTGTTTGTTGCTGATGGGGGTGAATTGCTGCTCGCCCAGAGTTATGCGAAGAACATGGGTCTATATGGAGAACGTGTTGGCGCCCTAAGCATTGTCTCCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGGTGAAACTTGTGGTTAGGCCAATGTACTCAAATCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAGGGACCGGGATTTGTACAATGAGTGGACTATTGAGCTGATGGCAATGGCTGATCGCATTATCAGCATGCGCCAACAACTTTTTGATGCTTTGCAATCCAGAGACAATGTGATTGGCCCGAGACACCAAATGGGACAGCAGATCCCGGTTCACGGCACACCTGGTGATTGGAGTCACATAATCAAGCAGATCGGAATGTTTACTTTCACAGGATTGAATACTGAGCAAGTTTCCTTCATGACTAAAGAGTACCATATATACCTGACATCCGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACAGTTCCTCATTTGGCTGATGCAATACATGCTGCTGTAACACGAGCTCTCTAA 1425 0.4498 MRPQSNNTCINNTSYFSSSSCSIDRRITTLSRHLLNHQMASVDSISVSPTASSDSVFAHLLPAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLVNEASRNKEYLPIVGVADFNKLSARLIFGADSPAIKENRVTTVQCLSGTGSLRVGGEFLARHYHQKTIYLPQPTWGNHPKIFNLAGLSVKTYRYYAPATRGLDFEGLLEDLGSAPSGSIVLLHACAHNPTGVDPTPEQWEQIRQLLRSKALLPFFDSAYQGFASGSLDVDALPVRLFVADGGELLLAQSYAKNMGLYGERVGALSIVSKSADVASRVESQVKLVVRPMYSNPPIHGASIVAAILRDRDLYNEWTIELMAMADRIISMRQQLFDALQSRDNVIGPRHQMGQQIPVHGTPGDWSHIIKQIGMFTFTGLNTEQVSFMTKEYHIYLTSDGRISMAGLSSKTVPHLADAIHAAVTRAL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0406 474 Gene3D Aspartate Aminotransferase, domain 1 62 466 IPR015422 GO:0003824
Lal21g0406 474 PANTHER ASPARTATE AMINOTRANSFERASE 390 473 - -
Lal21g0406 474 PANTHER ASPARTATE AMINOTRANSFERASE 54 389 - -
Lal21g0406 474 Gene3D - 116 357 IPR015421 GO:0003824
Lal21g0406 474 PRINTS Aspartate aminotransferase signature 231 250 IPR000796 GO:0006520|GO:0008483
Lal21g0406 474 PRINTS Aspartate aminotransferase signature 262 274 IPR000796 GO:0006520|GO:0008483
Lal21g0406 474 PRINTS Aspartate aminotransferase signature 330 355 IPR000796 GO:0006520|GO:0008483
Lal21g0406 474 PRINTS Aspartate aminotransferase signature 415 433 IPR000796 GO:0006520|GO:0008483
Lal21g0406 474 Pfam Aminotransferase class I and II 83 466 IPR004839 GO:0009058|GO:0030170
Lal21g0406 474 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 300 313 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lal21g0406 474 CDD AAT_like 84 454 - -
Lal21g0406 474 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Lal21g0406 474 PANTHER ASPARTATE AMINOTRANSFERASE 390 473 IPR000796 GO:0006520|GO:0008483
Lal21g0406 474 PANTHER ASPARTATE AMINOTRANSFERASE 54 389 IPR000796 GO:0006520|GO:0008483
Lal21g0406 474 SUPERFAMILY PLP-dependent transferases 55 472 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0406 Lal-Chr21 2816499 2821389 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0406 K14454 - gmx:547509 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0406 21 2816499 2821389 Lal21g0406 21 2816499 2821389 ECH
Lal21g0406 21 2816499 2821389 Lal4g0275 4 1766122 1770289 LSH