Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0264 ATGAGAAACAAATACTATACAGGCTATTACAAATTTTGGGACAAAAAGAGGTATAATTTCATATATTATCACTTCTTGCATCATCCTTTTTGCCCCATTCGCGTTAGGGTTTTCACTCTCGCACTTTCACTTCCTCAACCATTCAAATTCAAATTCCTCCATAGCCATATTCTCTCTTCTCTTAGTCAAGGTTTCGATAGTAATCGGCAGTGCCGTGAGTTTATCCAAGCAGCAGCGATGTCTCCATCTTATCTTCCTGCTACAACAGAGTCAATTGCTCTGGCATTGGAGGCCAAAGACCCATCCGAGGCCATCTCCATTCTTTATCGTGTACTTGATGATCCCTCGTCTTCACCAGAAGCTCTGCGTATGAAAGAGCAGGCCATCACAAACCTAAGTGACCTTCTCAGGCAGGAGAATAGGGGGGAGGATCTGCGTAGCCTTCTCACTCAGTTGAGGCCCTTCTTCTCCTTGATTCCTAAGGCAAAAACTGCAAAGATAGTTAGGGTAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTGCAAATTGCACTCTGCAAAGAAATGGTACAATGGACCCGTGCTGAAAAGCGTACATTTCTGAGGCAACGAGTTGAGGCTAGGCTTGCAGCTCTTCTGATGGAAAGTAAGGAGTATTCAGAAGCTTTGTCTCTTCTTTCTGGCTTGGTCAAAGAGGTTAGAAGATTAGATGACAAGCTTCTCCTTGTAGACATAGACTTGCTGGAAAGCAAACTACACTTCTCATTAAGAAACCTTCCAAAGTCAAAAGCTGCCCTCACAGCTGCAAGAACAGCTGCAAATGCTATTTATGTTCCACCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAGGAGAAGGATTATAAAACTGCATATAGTTACTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGAAGATCCGAAGGCTGTTTTTAGCCTCAAATACATGTTGCTGTGTAAGATCATGGTGAATCAAGCGGATGACGTGGGTGGAATTATTTCTTCTAAAGCCGGACTGCAATATGTTGGGTCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCTCATTCTAAGCGATCCCTGAAGTTATTTGAAGTTGCTTTGCGGGACTACAAGGCACAATTGGAGGATGACCCAATTGTCCATAGGCACCTGTCATCACTGTATGATACCCTCATGGAGCAAAATCTTTGCAAATTGATTGAGCCATTCTCAAGGGTTGAGATTGCACACGTTGCTGAGCTTATTGAACTTCCCATTGATCATGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCAGGGACATTGGATCAAGGTGCTGGATGCCTTGTCATATTTGACGATCCCAAGACCGATGCAATATATCCTGCAACCTTAGAAACCATTTCAAATGTTGGGAAAGTGGTGGACAGTCTTTATGCTAGGTCTGCAAAGATAATGGCATGA 1506 0.4309 MRNKYYTGYYKFWDKKRYNFIYYHFLHHPFCPIRVRVFTLALSLPQPFKFKFLHSHILSSLSQGFDSNRQCREFIQAAAMSPSYLPATTESIALALEAKDPSEAISILYRVLDDPSSSPEALRMKEQAITNLSDLLRQENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRVIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESKEYSEALSLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKSKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGSDLDAMKAVADAHSKRSLKLFEVALRDYKAQLEDDPIVHRHLSSLYDTLMEQNLCKLIEPFSRVEIAHVAELIELPIDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYARSAKIMA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0264 501 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 95 207 IPR040773 -
Lal4g0264 501 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 472 497 IPR040780 -
Lal4g0264 501 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 399 482 - -
Lal4g0264 501 Pfam PCI domain 364 465 IPR000717 -
Lal4g0264 501 SUPERFAMILY "Winged helix" DNA-binding domain 393 475 IPR036390 -
Lal4g0264 501 SUPERFAMILY TPR-like 208 404 IPR011990 GO:0005515
Lal4g0264 501 PANTHER - 81 501 - -
Lal4g0264 501 SMART PINT_4 399 482 IPR000717 -
Lal4g0264 501 Coils Coil 205 225 - -
Lal4g0264 501 ProSiteProfiles PCI domain profile. 302 470 IPR000717 -
Lal4g0264 501 Gene3D - 125 500 - -
Lal4g0264 501 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 81 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0264 Lal-Chr4 1708120 1717367 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0264 K03036 - gmx:100796188 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0286 17 1780630 1784412 Lal4g0264 4 1708120 1717367 LSH