Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0286 ATGTCAATACAACTTAAAAACCTTAAACTTGAGCAAAACGCAACGGTGCGTTTTAACTCTAGAAGCTGCCTCCACCGTGTATCGTGTTTTCCCATTGGCCCATTCTCTCCAAATCTCAAGGTTCCGTGCGATAAGGAGTTTATCCAATCTGCAGCCATGTCTTCATCTTATCTTCCTGCCACAACAGAGTCAATTGCTCTGGCATTGGAGGCCAAGGACCCATCTGAGGCCATCTCCATTCTTTATCGTGTGCTTGATGATCCTTCATCTTCACCTGAAGCTCTGCGTATGAAAGAGCAAGCCATCACAAACCTTAGTGACCTTCTCAAGCAGGAGAATAGGGGGGAGGATCTGCGCAGCCTGCTCACTCAGTTGAGGCCCTTCTTCTCCTTGATTCCTAAGGCAAAAACTGCTAAGATAGTTAGGGTAGTGATTGACTCAGTTGCTAAAATTCCAGGGACATCTGATCTACAAATTGCACTTTGCAAAGAAATGGTGCAATGGACCCGTGCTGAAAAGCGTACATTTCTAAGGCAACGAGTTGAGGCCAGGCTTGCCGCGCTTCTGATGGAAAGTAAGGAGTATTCAGAAGCTTTATCTCTTCTTTCTGGCTTGGTCAAAGAGGTTAGAAGATTAGATGACAAGCTTCTCCTCGTCGACATAGACTTGCTGGAAAGCAAACTACACTTCTCATTAAGAAACCTTCCAAAAGCAAAAGCTGCCCTCACAGCTGCAAGAACTGCTGCAAATGCTATTTATGTTCCACCTGGTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAGGAGAAGGATTATAAAACTGCCTATAGTTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGAAGATCCCAAGGCAGTTTTTAGCCTAAAATACATGCTGTTGTGTAAGATCATGGTGAATCAAGCAGATGATGTGGGTGGAATTATTTCTTCTAAAGCTGGACTGCAATATGTTGGGCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCTCATTCTAAGCGATCCCTGAAGTTATTTGAAGTTGCTTTGCGGGACTACAAGGCACAATTGGAGGAAGACCCAATTGTCCACAGGCACCTGTCATCACTGTATGATACCCTCATGGAGCAGAACCTTTGCAGATTGATTGAGCCATTCTCAAGGGTTGAGATTGCACACATTGCTGAGCTTATTGAACTTCCCATTGATCATGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCAGGGACGTTGGACCAAGGTGCTGGGTGCCTCGTCATATTTGACGATCCCAAGACTGATGCGATATATCCCGCAACCTTAGAAACCATTTCCAATGTCGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGGATGA 1425 0.4463 MSIQLKNLKLEQNATVRFNSRSCLHRVSCFPIGPFSPNLKVPCDKEFIQSAAMSSSYLPATTESIALALEAKDPSEAISILYRVLDDPSSSPEALRMKEQAITNLSDLLKQENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRVVIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESKEYSEALSLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPGQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFEVALRDYKAQLEEDPIVHRHLSSLYDTLMEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMG 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0286 474 SUPERFAMILY TPR-like 181 376 IPR011990 GO:0005515
Lal17g0286 474 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 53 473 - -
Lal17g0286 474 SMART PINT_4 372 455 IPR000717 -
Lal17g0286 474 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 68 180 IPR040773 -
Lal17g0286 474 Coils Coil 178 198 - -
Lal17g0286 474 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 445 470 IPR040780 -
Lal17g0286 474 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 372 455 - -
Lal17g0286 474 Gene3D - 98 473 - -
Lal17g0286 474 SUPERFAMILY "Winged helix" DNA-binding domain 366 448 IPR036390 -
Lal17g0286 474 ProSiteProfiles PCI domain profile. 275 443 IPR000717 -
Lal17g0286 474 PANTHER - 53 473 - -
Lal17g0286 474 Pfam PCI domain 337 438 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0286 Lal-Chr17 1780630 1784412 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0286 K03036 - gmx:100796188 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0286 17 1780630 1784412 Lal4g0264 4 1708120 1717367 LSH