Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0238 ATGTCCAACAATCTTGTTTCCGAGCCGATACAAAGCATGCAGATAGCTCAGTTGGAGTCTATTGTGAACAACGTTGATTCGTCGGGGAAACATATGGAAATGCAGCAACAGGCTACCTTGAATGATCATGTTGGAGTGTCTGGGTCTCAAGGCTTACCAACTTCAATCATGCAGAGTGGACACGGGGTAGGATCACATCTGAATAGCCTGGGAATGAGTCACCTTCTATTGCCTCAGAAACAATCCTTCCAAATGGGGACAATACCGAATAATATGGGGCCACAGCAATTGTTGACCACCCCCAAGCGGAAATCACCGATGGAGTTTTCATATGGTAGCTCTGTGAGCAAGCGGGTTGCACATGTGGGCCACAGACCTTGGTTGCAGGAAGTATCTAATACATCCAATAAAGGTTCTACACAGATGCAATCCAAGTCTAATGCGTCCAAGTCGCACAATTTGGCAGTGTCTGGTAAGAGAAAAACACAGATGGAATCCACATCCGTTAAACATGGTACACCTCGATCCACCAATACTAAAAATCAAAATGCAGAGATTAAACAAACTTCTAAGGTTCAAACTGAATCATCTGAAACTGTCAGGTCCAAGATGAGGGAATCATTAGCTGCTGCTCTAGCCTTGGTTCCTCAGCAAGACAAACCTGTGGCTACGAACAATAATACACTAACTGGTGCCTCTAACACCGAAGATAAGTTAAAGAATAGCTCCCCAGGTATTGGACCCGCATCTTCTTCCATCGATGCTGCTTTAGAGAAAAAGCCAGAAATTTCTCAATCTGTTCATTCCTCTTTCACTGCAGCTGATTCAGTTGACCATGTGATGGGAGAGCAAGGAAAGGGCACAGCCTCTAATGAGGATTTGTCTGAAAAGTGCAATGACTATGAAGCAGGACCCACAAATATATTTAATAATGAAAGTATACTAAGTTCTATGCAGGTCTTGAACTGTGATAAGCCAGACTTCCAATCAAGTTACACTTTGACTACTGATGATGTTCCTTTCAGTGACAGTTTCTTTGTGAAAGATGACCTTTTGCAAGGAAATGGTCTTTCTTGGGTAATATCTGATATGATAGACATGGAAGACCCAAGGGATTGCCAAACTACTATAGAGCATAGACCAGAACCTGAGGAAATAGTCGGAGGCTGTAGGGAGACAGTCCTTTTACCTGAACTTTTAGCCTCAAGGATCGAAGAAGAACTCTTCAAATTGTTTGGTGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCTCTTCTATTCAATTTGAAAGACCGCAATAATCCTGAACTAAGAGAAAGGGTTATGTCTGGCGAAATTCCCCCAGAACAGTTATGTTCGATGACCGCAGAGGAACTTGCTTCAAAGGAGCTTTCTCAGTGGAGGATAGCCAAAGCTGAGGAGCATGAGAAAATGGTGGTTTTACCTGATTCCGATGTTGATATTAGACGTTTGGTCAAGAAAACACATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATATCCCGATGGAGGAGGTTTCTGGTGGCACAACCTCAGTTGCTCGAAACCAAAGAGTTAAAAAGAATGTGGAAGCATCTTCTTCTCGTACTCAATCTGATGTGGTCAAAGGCAATATGAGCACTGATGGTGGGAAGAGCAATTTACAGAATAATAATACATTTTCCATTACCATTTCATCAAACGATGGTTCTGATCCAATGGAAGGGCTTATGACAGATGATGCATTGAAGGACCCTAACTTTCTTCCGCCAATTGTTTCTCTCGATGAGTTCATGGAATCCCTTGATTCCGAGCCACCATTTGCAAATTTACCCGGGGAACCTGGAAAAATGACACCAATCTCAGTCAAGGATTCCAAGGTTGGATCTAAATCAGTGTCTTCTGATTTAACTCCAACTGTGCATGTTGATGTCACCCATGATAAGCCCGAGAGTGAGAAGCTACAGAATCCTGGTGCTGCAGAGGAAAAAAGGGTTAATGCAGAATCCAGGGGTATTTCTTCTGATACAATACGTGGTGAGAGTCAAGCTAACATGAAGCCGACTAATGGTCATACCAAGGAAAGGTCAACTGATGAAATGAAGCCTGCTTCTAGTGATGCTGAGTTAAGAGCCAGCCAGTCTCATACAGTAGAGAGATCCGGTAATAGTAATATATATTCCAAAACTACTGTCCCCACCAAGGATGAATGTTTCTGGGAGGGAATGCTTCAAACCAATTCCAACTATTCTGTCATAAGCATCTTTAAAAGCGGTGAGAAAACTTCTGCAAAAGATTGGCCAGGACTTCTTGAGATCAAGGGAAGGGTTCGGCTTGATGCATTTGAGAAATTTCTACAAGAGCTTCGACTGTCAAGAAGTCGTGCTATCATGGTTTTGCATTTTGTCTCCAAAGGTTCATCCCCTATCAATGAGCTATCAACTATCCGTGAGGTTGCTGACTCATACATTGTGGATGAGAGAGTAGGATTTGCTGAGCCTGTGCATGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATACTCAGCAATATACTTCCAAGGGAACAAACTGAGGCAGTTAATTCTATTGATAATGGTCTTATTGGGGTTATTGTATGGAGAAAAACTAATTTAACAACTTCTATATCACCCACCACTTCATCACACCACAAAAACAGTTTTAAAAGACAAAATTCCTCTAGGAGACAGCAAGATACAAATGTGAATGCACATCCCACTCACAATCTAGTCCCCTCTACGGAGACTATACCCACATGTGATGATGTTGACGATGATGTTCCTCCTGGATTCGGACCACCAGTGGCCCGAATCGAGGATGACTTGCCGGAGTTCAATTTCTCCAGCGGTTCAAATCCATCACATGTGATTCAGAAACCAATGGGACCAAGTATTGTCCCATATCACTCAGTTAAACAATCACTCCCATCACGCCCTGCAGAACAAATGAGGGAACTTGTGCACAAATATGGTTCAAACAAAGCAAATGTATCTTCAGTTAATTGGCAGGATAAATTTGGGGGCACAATTCAACCCTGGATGGATGATGAGGATGATGATATACCTGAATGGAAGCCTCAAAATTCCCAGAATCAGATTCCTACCCAAATGTCAATGCAAAATTTTCATGTAAGGTCTCAGATGATGAATCAATCTTTTCAAAGCTCACATCAGCAGACAATTATACCAACACAATATCTGCAACCCCCAATGAATGTTACGCATGCCCATGGCCAAAGCAATTTTGGTCCAACTTGGAATCCTTCTGCTCAGGGAAATAACCCACAGCCTAGTGTAGGGCATCCCTACGGAGTGCCTAGGCAAGGGCAAAGCACTACCTGGCCTCAAAATGTTTCTAGAAGTAGGGGATTTTAG 3417 0.4252 MSNNLVSEPIQSMQIAQLESIVNNVDSSGKHMEMQQQATLNDHVGVSGSQGLPTSIMQSGHGVGSHLNSLGMSHLLLPQKQSFQMGTIPNNMGPQQLLTTPKRKSPMEFSYGSSVSKRVAHVGHRPWLQEVSNTSNKGSTQMQSKSNASKSHNLAVSGKRKTQMESTSVKHGTPRSTNTKNQNAEIKQTSKVQTESSETVRSKMRESLAAALALVPQQDKPVATNNNTLTGASNTEDKLKNSSPGIGPASSSIDAALEKKPEISQSVHSSFTAADSVDHVMGEQGKGTASNEDLSEKCNDYEAGPTNIFNNESILSSMQVLNCDKPDFQSSYTLTTDDVPFSDSFFVKDDLLQGNGLSWVISDMIDMEDPRDCQTTIEHRPEPEEIVGGCRETVLLPELLASRIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEIPPEQLCSMTAEELASKELSQWRIAKAEEHEKMVVLPDSDVDIRRLVKKTHKGEFQVEVEHEDNIPMEEVSGGTTSVARNQRVKKNVEASSSRTQSDVVKGNMSTDGGKSNLQNNNTFSITISSNDGSDPMEGLMTDDALKDPNFLPPIVSLDEFMESLDSEPPFANLPGEPGKMTPISVKDSKVGSKSVSSDLTPTVHVDVTHDKPESEKLQNPGAAEEKRVNAESRGISSDTIRGESQANMKPTNGHTKERSTDEMKPASSDAELRASQSHTVERSGNSNIYSKTTVPTKDECFWEGMLQTNSNYSVISIFKSGEKTSAKDWPGLLEIKGRVRLDAFEKFLQELRLSRSRAIMVLHFVSKGSSPINELSTIREVADSYIVDERVGFAEPVHGVELYFCPPHKKTVEILSNILPREQTEAVNSIDNGLIGVIVWRKTNLTTSISPTTSSHHKNSFKRQNSSRRQQDTNVNAHPTHNLVPSTETIPTCDDVDDDVPPGFGPPVARIEDDLPEFNFSSGSNPSHVIQKPMGPSIVPYHSVKQSLPSRPAEQMRELVHKYGSNKANVSSVNWQDKFGGTIQPWMDDEDDDIPEWKPQNSQNQIPTQMSMQNFHVRSQMMNQSFQSSHQQTIIPTQYLQPPMNVTHAHGQSNFGPTWNPSAQGNNPQPSVGHPYGVPRQGQSTTWPQNVSRSRGF 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0238 1138 MobiDBLite consensus disorder prediction 125 203 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 674 694 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 515 561 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 1119 1138 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 711 732 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 889 928 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 628 644 - -
Lal4g0238 1138 Pfam Transcription factor S-II (TFIIS), central domain 397 477 IPR003618 GO:0006351
Lal4g0238 1138 MobiDBLite consensus disorder prediction 1090 1138 - -
Lal4g0238 1138 SUPERFAMILY Elongation factor TFIIS domain 2 391 464 IPR036575 GO:0006351
Lal4g0238 1138 SMART mid_6 368 471 IPR003618 GO:0006351
Lal4g0238 1138 MobiDBLite consensus disorder prediction 645 673 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 128 197 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 219 252 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 607 732 - -
Lal4g0238 1138 Pfam SPOC domain 739 881 IPR012921 -
Lal4g0238 1138 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 11 1120 - -
Lal4g0238 1138 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 11 1120 - -
Lal4g0238 1138 MobiDBLite consensus disorder prediction 1090 1112 - -
Lal4g0238 1138 Gene3D - 376 463 IPR036575 GO:0006351
Lal4g0238 1138 MobiDBLite consensus disorder prediction 695 709 - -
Lal4g0238 1138 ProSiteProfiles TFIIS central domain profile. 379 488 IPR003618 GO:0006351
Lal4g0238 1138 MobiDBLite consensus disorder prediction 219 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0238 Lal-Chr4 1493701 1499751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0238 - - gmx:100808809 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0253 17 1572219 1578493 Lal4g0238 4 1493701 1499751 LSH