Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0253 ATGTCCAACAATCTCGTTTCTGAGCCGATAAGAAGCTTGCAGATGGCTCAGTTGGATCCCATTGTAAACAATGTTGATTCATCAGGGCGACAGATGGAAATGGGACTTTTAGATTCTGTGTCCAGTGTTCCTGTGTCACTGCAACAAGCAACCTCAAATGATCATGTTGGAAGGTCCGGCTCTCAAGGTTTACCAACTTCAGTCATACAGAGCGGACACAGGGTAGAAGCACATATGAGTAGCCTGGGAATGGCTCACCTTTTTTTGCCTCAGAAACAACCCGTGCAAATGGGGACAATGCCGAATAATATGAGGCCAAAGCAAATGTCGATCACACCCAAGAGGAAGGTGCCGACGGAATTTTCGACTGGTAGCTCTGTGACATCTAACAAGCGGGTTGCACATATAGACAATAGACATTGGTTGCAGCAAGTATCTACTACATCAAATAAAGGTTCTCTGCAGATGCAATCCCAGTCTAATGCCTCAAGGTCACAGCACGCGTCAGCATCTGGTAAGAGAAAAACACAGATGGAACCCACTTCTGGTAAACCCAGCACACCTCGTTCCGTGAATCCTAAAAATCAAAATGCGCAGATTAAGAAAACCTCTAAAGGTCATTCTGAATCATCTGAAAGTGTCAGATCCAAGATGAGTGAGTCATTAGCTGCTGCTCTAGCCTTGGTTTCTCAGCAAGACAAACCTCTGGTTATGAACAATAATACAAAATGCGATGCCTCTGATGTTGAGGGTAAATTGAAGAACAGCTCTCTGGGAACTGGGTCAGCATCTGCTTCCATCGATACTGCTTTGGAGCAAAAGCAGGAAAATTCTCAATCTGTTCACTCCTCTTTCACCGCAGCTGATTCAGTTGAGCACATGACGGGAGAGCAAGGAAAGGGTACAACCTCTTATGATGATTTTTCTGAACAATGCAAGGACTATGAAGCAGGATCCACAAATGTATATAACGAGGAAAGTATAAAAAGTTCTATGCAAGTGTTGAATTGTGATACCTCAGACTTCCAGTCAAGTTATACTTTGACTACTGATGATGTTCCCTTCAGTGACAGTTTCTTTGTGAAAGATGACCTTTTGCAGGGGAATGATCTTTCCTGGGTTATATCTGATATGATGGACATGGAAGACCCAAGGGATTGCCAAACTACTATAGAGAAGAGGCCACCTGAGGAAATAGTCAGAGATTGTAGGGAGACAGCCCTTTCACCTGAACTCTTAGCTTCAAGGATAGAAGCAGAACTCTTCAAATTGTTTGGAGGCGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCTCTTTTATTCAATTTGAAAGACCGCAATAATCCTGAACTAAGAGAAAGGGTTATGTCTGGTGAAATTCCCCCAGAACAGTTATGTTCCATGACTGCAGAGGAACTTGCTTCAGAGGAGCTTTCTCAGTGGCGCTTAGCCAAGGCTGAGGAGCATGAGAAAATGGTGGTCTTAAATGACTCAGATGTTGATATTAGACGTTTAGTCAAGAAAACACATAAAGGTGAATTTCAAGTGGAAGTTGATCATGAAGACAATGTCCCAGTGCAGGAGGTTTCAGGTGGAATAATCTCAGTTGTTCGAAACCAAAGAACTAAAAAGGATGTGGAAGTATCTTCTCCTAAACCCGATGTGGTCAAAGGTGATATGAGCACTGATGGTGAGAAGAGCAATTTACAGAAGGATAATGATGGTTCCGATCCAATGCAAGGGCTTATGACAGATAATGCATTGAAGGACCCTGATTTTCTTCCGCCAATTGTCTCTCTTGATGAATTAATGGAATCCCTTAATTCCGAGTCACCGTCTGTGAATTTACGTGGGGAGCCTGGAAAAGTGACACCTATCTCAGACAAGGATGATTCCAAGGTTGGAGCTAGGTCGAAAGTTTCTGATTTAACTCCAGGTGAGCAAGTTGATGTCACCCCTAATAAGCCTGAGAGTGAGAAGCTTCAGAGCACAAGTGTCAATCCAGATGCTTCAAAGGGTAAAAGGAATAATGCAGAATCTGGGGGTATTTCTTCCGATATAAAACGTGCTGAGCGTCATACCAAGGAACAGGCAATTGAGGAAATCAAGTCTGCTTCCGGTCTTGCTTTGTTGAGAGCTCGTGCAGAAGAGAGATCTGGTAATAGTAATACATGTTCGAAAATTACTGTCCCCACAAAGGATGAAAGTTTCTGGGAGGGAATGCTTCAAGTCAATTCCAATTATTCAGTCATAAGCATCTTTAAAAGTGGTGAAAAAACTTCTGCGAAAGAGTGGCCTGGGCTTCTTGAGATCAAGGGAAGGGTTCGGCTTGATGCATTTGAGAAGTTTCTACAAGAGCTTCGGCTCTCAAGAAGTCGTGCTATCATGATTTTGCATTTTGTTTCCAAAGTTTCTTTCCCCAACAATGAGCAATCAACTCTTCTTGAGGTTGCTGACTCTTACATTGTGGACGAGAGAGTAGGGTTTGCTGAACCTGTGCATGGAGTTGAACTTTACTTTTGTCCACCTCATAAGAAAACAGTTGAAATTCTCAGCAACATACTTTCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGTCTTATAGGTGTTATTGTATGGAGAAAAACTAATTTAACAACTTCGTCTATATCACCCACCACTACTTCACACCAAAAATATAGTTTTAAAAGACAAAATTCCTCTAGGAGACAGCAAGATGCAAATTTGAATGCCTATCCCACCCACAAACCATTGACCTCTATGGGCTCCAAGCCTATTGAGACTGGACCCTCATGTGATGATGATGATGACGATGATGATGTTCCTCCTGGATTCGGACAACCGGTTGCCCGAGTTGAGGATGATCTACCGGAGTTCAATTTCTCCACCAGTTCAAACCCATCACAAGTGGTCCAGAAGCCAATGGGACCGCGTATGGTCCCATTTGGCTCGATTAACCAATCACTCCCATTGTGCCCTGCAGAACAAATGAGGGAGCTTGTGCACAAATATGGGCAAAACAAAGCAAATGCAACTTCAGTTAAGTGGGAGGATAAATTTGGTGGTACAATTCAACCTTGGAACGATGATGATGATGATATACCTGAATGGCAGCCTCAAAATTCCCAGAATCAGTTTCGTACCCAACAACAGATAATGCAAAACTTTCATGTAAGACCTCACACGTTGAATCAATCGTTTCCAAGCTCACACCAGTACCCAATTATGCCAACAAAATATCTGCAACCCCCAATGAGTGTTACTCATGGACAACGAAATTTTGGTCCACCCTCAGTTCCTTCTGCCCAAGGAAACAACCTACAGCCTAATGTGGGGCACCTCTACGGAGTGCCTGGGCAAGGCACTACTTGGCCTCAAAATGTTGCTACAAGTAGGGGATTTTAG 3414 0.4303 MSNNLVSEPIRSLQMAQLDPIVNNVDSSGRQMEMGLLDSVSSVPVSLQQATSNDHVGRSGSQGLPTSVIQSGHRVEAHMSSLGMAHLFLPQKQPVQMGTMPNNMRPKQMSITPKRKVPTEFSTGSSVTSNKRVAHIDNRHWLQQVSTTSNKGSLQMQSQSNASRSQHASASGKRKTQMEPTSGKPSTPRSVNPKNQNAQIKKTSKGHSESSESVRSKMSESLAAALALVSQQDKPLVMNNNTKCDASDVEGKLKNSSLGTGSASASIDTALEQKQENSQSVHSSFTAADSVEHMTGEQGKGTTSYDDFSEQCKDYEAGSTNVYNEESIKSSMQVLNCDTSDFQSSYTLTTDDVPFSDSFFVKDDLLQGNDLSWVISDMMDMEDPRDCQTTIEKRPPEEIVRDCRETALSPELLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEIPPEQLCSMTAEELASEELSQWRLAKAEEHEKMVVLNDSDVDIRRLVKKTHKGEFQVEVDHEDNVPVQEVSGGIISVVRNQRTKKDVEVSSPKPDVVKGDMSTDGEKSNLQKDNDGSDPMQGLMTDNALKDPDFLPPIVSLDELMESLNSESPSVNLRGEPGKVTPISDKDDSKVGARSKVSDLTPGEQVDVTPNKPESEKLQSTSVNPDASKGKRNNAESGGISSDIKRAERHTKEQAIEEIKSASGLALLRARAEERSGNSNTCSKITVPTKDESFWEGMLQVNSNYSVISIFKSGEKTSAKEWPGLLEIKGRVRLDAFEKFLQELRLSRSRAIMILHFVSKVSFPNNEQSTLLEVADSYIVDERVGFAEPVHGVELYFCPPHKKTVEILSNILSKEQIEAVNSIDNGLIGVIVWRKTNLTTSSISPTTTSHQKYSFKRQNSSRRQQDANLNAYPTHKPLTSMGSKPIETGPSCDDDDDDDDVPPGFGQPVARVEDDLPEFNFSTSSNPSQVVQKPMGPRMVPFGSINQSLPLCPAEQMRELVHKYGQNKANATSVKWEDKFGGTIQPWNDDDDDIPEWQPQNSQNQFRTQQQIMQNFHVRPHTLNQSFPSSHQYPIMPTKYLQPPMSVTHGQRNFGPPSVPSAQGNNLQPNVGHLYGVPGQGTTWPQNVATSRGF 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0253 1137 MobiDBLite consensus disorder prediction 541 593 - -
Lal17g0253 1137 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 30 1121 - -
Lal17g0253 1137 SUPERFAMILY Elongation factor TFIIS domain 2 400 477 IPR036575 GO:0006351
Lal17g0253 1137 SMART mid_6 382 484 IPR003618 GO:0006351
Lal17g0253 1137 MobiDBLite consensus disorder prediction 253 306 - -
Lal17g0253 1137 MobiDBLite consensus disorder prediction 655 683 - -
Lal17g0253 1137 MobiDBLite consensus disorder prediction 238 306 - -
Lal17g0253 1137 MobiDBLite consensus disorder prediction 886 953 - -
Lal17g0253 1137 MobiDBLite consensus disorder prediction 109 217 - -
Lal17g0253 1137 ProSiteProfiles TFIIS central domain profile. 391 501 IPR003618 GO:0006351
Lal17g0253 1137 MobiDBLite consensus disorder prediction 541 572 - -
Lal17g0253 1137 Pfam Transcription factor S-II (TFIIS), central domain 406 490 IPR003618 GO:0006351
Lal17g0253 1137 Gene3D - 388 476 IPR036575 GO:0006351
Lal17g0253 1137 MobiDBLite consensus disorder prediction 109 132 - -
Lal17g0253 1137 MobiDBLite consensus disorder prediction 140 204 - -
Lal17g0253 1137 Pfam SPOC domain 733 876 IPR012921 -
Lal17g0253 1137 MobiDBLite consensus disorder prediction 609 696 - -
Lal17g0253 1137 MobiDBLite consensus disorder prediction 623 637 - -
Lal17g0253 1137 MobiDBLite consensus disorder prediction 886 920 - -
Lal17g0253 1137 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 30 1121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0253 Lal-Chr17 1572219 1578493 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0253 - - gmx:100808809 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0253 17 1572219 1578493 Lal4g0238 4 1493701 1499751 LSH