Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0138 ATGTCGTCTCTACCACTTTCTTCTTCCGTCGTTTTGAATGAACAACCAAGTTTGTCTCACTTCTTGACCCAAAATCATAACCCCTTTCACAACCAAACTGATCAACCTTTAGAAGATGCTTTTGCTCTTCTCTCTGTTTCTCCTTTTGATTTCAATTACCCAAATTCAGTCGCTGCTGGGTTTTCTACTCTTAACGGCACACCGAATAATCATTCTTTTGAAAACCCTACTTTTCCTACTCCTCAAAGGTCCAATCTTTATGACCAAACCCATGATAACAATGCAGTTATTGGTGGTGGGTTACCTTCATTGCATAATTTTTGGGCTGGGTATGAAACTGAAAGAGGACGTGTGAACTTGAACAACCATTCGTGTGGTTCCTTTCCTGCGTCCACTGCTAGTGGTTGTTCTTCAAGAAACAATAATGGGTTTCTTGATTCTGAGGCTTTTATGATGCGAACAGGTTTTGGAGGGGTTCTTGTTGATGATCAGTTTTTGTTGCGTAATAGGTTTAATGTGAATAGTGGAATGAGTGATCAGCATTGGTTGAATAATCTGAGGGGAAGGGTTGTGTTATTAGCCAAGGATCAAAGTGGACGCAGGGATTTGATATCAATAATGAAAAGATTGAAGGTGACAAGCAATGAGACTTCTTTCATTTTCTTGGAGCTTCTTGATCATGTTGCTGAGTTGATGATTGAGCCCTTTGGGAATTATGTTGTTCAGAAGTTGGTGGAAATCTGCACTGAAGAGCAAAGGGGTCTCATCATTTTGAAGGTGATCCAGCCTAATCTGACGCTAGTCAGAATTTGTCTTAACACATATGGAACCCGTTCTGTGGAGAAATTGTTAGAGAATATTACCTCTCAGCAGCAACGATCTCTTGTTATGTCAGCTCTAAGCCCTGGTGCTGCTATATTGGCCATAGATGCTAATGGGCATCGTGTGCTCCTGCATTGTCTAAAACATTTCTCACCAGAAGATAATAAGTGTCTTCTGAGAGTGGTGGCAAACCATTGTTTTAGGATCGCAACAGATAAGACTGGGTGTTGTGTGCTGAAGGAATGTGTTAATTATGCTCATGGAGAAATCAAGAAGCGGCTGATCGTTGAGATCATAGTAAATGCTCCACTCTTAGCAGAAGATGCTTACGGCAACTATGTCTTGCAACACTTAGTGTCTCCAAAAACACCAATAGTTACAGAATGTCTACTGAGACAACTTGAAGGGAATTTCTTATCTCTTTCCCGCAATAAGTATGGGAGTAATGTTGTGGAGAAGTTCTTTGTAGAAACTGGGGAACAGCATAAAAAACGTATCATTTTGGAGTTGCTTCACCATCCAGATGTTGCAAGGCTTCTTGTAGATCCATTTGGAAATTACGTCATCCGATCTGCAATCTTGGGATCCAAGGGTGCTATTCAAGATACCCTGTTGCAGCTTATCCAAATTAACTCTCCAGTGATGCAAACCAATGTCTATGGCAGGAAATTACTAGAGAAGTTTGGGAGTGGGAGACTAAGGCGTTCATAA 1533 0.4097 MSSLPLSSSVVLNEQPSLSHFLTQNHNPFHNQTDQPLEDAFALLSVSPFDFNYPNSVAAGFSTLNGTPNNHSFENPTFPTPQRSNLYDQTHDNNAVIGGGLPSLHNFWAGYETERGRVNLNNHSCGSFPASTASGCSSRNNNGFLDSEAFMMRTGFGGVLVDDQFLLRNRFNVNSGMSDQHWLNNLRGRVVLLAKDQSGRRDLISIMKRLKVTSNETSFIFLELLDHVAELMIEPFGNYVVQKLVEICTEEQRGLIILKVIQPNLTLVRICLNTYGTRSVEKLLENITSQQQRSLVMSALSPGAAILAIDANGHRVLLHCLKHFSPEDNKCLLRVVANHCFRIATDKTGCCVLKECVNYAHGEIKKRLIVEIIVNAPLLAEDAYGNYVLQHLVSPKTPIVTECLLRQLEGNFLSLSRNKYGSNVVEKFFVETGEQHKKRIILELLHHPDVARLLVDPFGNYVIRSAILGSKGAIQDTLLQLIQINSPVMQTNVYGRKLLEKFGSGRLRRS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0138 510 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 108 501 - -
Lal4g0138 510 Gene3D - 168 505 IPR011989 -
Lal4g0138 510 ProSiteProfiles Pumilio RNA-binding repeat profile. 334 371 IPR001313 GO:0003723
Lal4g0138 510 SMART pum_5 223 258 IPR001313 GO:0003723
Lal4g0138 510 SMART pum_5 371 406 IPR001313 GO:0003723
Lal4g0138 510 SMART pum_5 335 370 IPR001313 GO:0003723
Lal4g0138 510 SMART pum_5 299 334 IPR001313 GO:0003723
Lal4g0138 510 SMART pum_5 262 297 IPR001313 GO:0003723
Lal4g0138 510 SMART pum_5 445 480 IPR001313 GO:0003723
Lal4g0138 510 SMART pum_5 407 442 IPR001313 GO:0003723
Lal4g0138 510 Pfam Pumilio-family RNA binding repeat 411 445 IPR001313 GO:0003723
Lal4g0138 510 Pfam Pumilio-family RNA binding repeat 307 335 IPR001313 GO:0003723
Lal4g0138 510 Pfam Pumilio-family RNA binding repeat 268 296 IPR001313 GO:0003723
Lal4g0138 510 Pfam Pumilio-family RNA binding repeat 379 392 IPR001313 GO:0003723
Lal4g0138 510 Pfam Pumilio-family RNA binding repeat 339 373 IPR001313 GO:0003723
Lal4g0138 510 Pfam Pumilio-family RNA binding repeat 227 260 IPR001313 GO:0003723
Lal4g0138 510 ProSiteProfiles Pumilio RNA-binding repeat profile. 223 259 IPR001313 GO:0003723
Lal4g0138 510 CDD Pumilio 188 501 IPR033712 GO:0003723
Lal4g0138 510 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 162 506 IPR033133 GO:0003723
Lal4g0138 510 ProSiteProfiles Pumilio RNA-binding repeat profile. 407 443 IPR001313 GO:0003723
Lal4g0138 510 PANTHER PUMILIO HOMOLOG 15 108 501 - -
Lal4g0138 510 ProSiteProfiles Pumilio RNA-binding repeat profile. 260 297 IPR001313 GO:0003723
Lal4g0138 510 SUPERFAMILY ARM repeat 180 501 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0138 Lal-Chr4 866453 869096 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0138 - - lang:109343871 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0138 4 866453 869096 Lal4g0138 4 866453 869096 ECH
Lal21g0226 21 1492170 1495135 Lal4g0138 4 866453 869096 LSH