Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0226 ATGTCGTCTTTATCACCTTCTCCTTTCGTTTTGAACGAAGAGGATTCTACTACTTCATTGTCTTCATCGTCACAAGCAAGTTTTTCTCATTTTTTGATCCAAAACCAAAACCCAAATCCCTTTCACTCTCATAACCAAACTGATCATTTTTTACAAGACGCTTTTGCTCGTCTTTCTGTCTCTCCCTTCGATTTCAATTACTCATCTTCAATAGCGAGTGGGTTTTCTGCTCTTAACGGCGCATCAAATAATCACTCTTTTGATAGCCCCACTTTTCAACCTTCTCAAAGTTCCAATCTTTATGGCCAAACCCATAAGAACAATGCTGTTAATGCTGTTGTTGTTGGTGGGTTACCTTCACTTCAGAATTGTTGGGTTGGGTATGGAAGAGAACGTGTGAAGTCGAACAACCTTCCTTCTGGTTCCTATCCTGCATTGAGTGCTGGCGGTTACTTTTCAAGAAACAATAATGGGTTTCTTGATTCTGAGTCTTTTGTGAGGGAAACTGGATCTGGAGGGGTTGTGATGAATGATCATCTTCTGGGGAATAAGTTTGATGTAAATAATGGAATTAGTAGTCCTACTCCACACTGGTTGAACAATTTGAGGGGAAGGGTTGTGTTATTTGCCAAGGATCAAAGTGGACACAAGGATTTGATATCAATGATGAAAAGATTGACAGTGACAATCAATGAGACTTCTTTCATCTTCTTGGAGCTTATTGATCACATGGCTGAGTTGATGGTTGACCCCTTTGGGAATTATGTTATTCAGAAGTTGGTGGAAATTTGCACTGAAGACCAAAGGACTCTCATTATTTTGAGGGTGATCCAGCCTAATCTTATGTTAGTCAGAATATGTCTTAACCCACATGGAACCAGGTCTGTGGAGAAATTATTAGAGAATATTACCACTGAGCAGCAACGAGCTCTTGTTATGTCAGCTCTAAGCCCTGGTGCTGCTACATTGGCTACAGATACAACTGGTCACCGTGTACTTCTGCATTGTCTAAGATATTTCCCACCTGAAGATAATAAGGATCTTCTGAGAGTAGTGGTAAACCACTGTTTTGGGATCGCAACTGATAAGACTGGGTGTTGTGTGCTGCATCAATGTATTAGCTATGCTCATGGAGAAACCAAAAAGCAACTGATTGCTGAGATAATAGTAAATGCTCCACTCCTAGCAGAAGATGCCTACGGCAACTATGTTGTGCAAGACTTGGTGTCTTCAAAAACACCAATAGTTACAGAATGTCTTCTGAGACAGCTTGAAGGGAAGTTTTTATCTCTTTCCCGCAATAAATATGGGAGTAATGTGGTTGAGAAGTTCCTTGTAGAGGTAGGGGACCAGCATAAAAGGCGCATTATTTTGGAGTTGCTCCATAATCCAGATGTTGCAAGGCTTCTTGTGGATCCATTTGGAAATTATGTCATCAAATCTGCAGTCTCTAAGTCCAAGGGTGCTATTCAAGATGCCCTGCTGCAACTTATCCAGCTTAACTCTCCAATGATGCGAACCAACGTCTATGGCCGGAAGTTACTAGAGAAGTTTGGCAGTGGGAGACTGCGGCGTTCATAG 1581 0.4137 MSSLSPSPFVLNEEDSTTSLSSSSQASFSHFLIQNQNPNPFHSHNQTDHFLQDAFARLSVSPFDFNYSSSIASGFSALNGASNNHSFDSPTFQPSQSSNLYGQTHKNNAVNAVVVGGLPSLQNCWVGYGRERVKSNNLPSGSYPALSAGGYFSRNNNGFLDSESFVRETGSGGVVMNDHLLGNKFDVNNGISSPTPHWLNNLRGRVVLFAKDQSGHKDLISMMKRLTVTINETSFIFLELIDHMAELMVDPFGNYVIQKLVEICTEDQRTLIILRVIQPNLMLVRICLNPHGTRSVEKLLENITTEQQRALVMSALSPGAATLATDTTGHRVLLHCLRYFPPEDNKDLLRVVVNHCFGIATDKTGCCVLHQCISYAHGETKKQLIAEIIVNAPLLAEDAYGNYVVQDLVSSKTPIVTECLLRQLEGKFLSLSRNKYGSNVVEKFLVEVGDQHKRRIILELLHNPDVARLLVDPFGNYVIKSAVSKSKGAIQDALLQLIQLNSPMMRTNVYGRKLLEKFGSGRLRRS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0226 526 ProSiteProfiles Pumilio RNA-binding repeat profile. 275 313 IPR001313 GO:0003723
Lal21g0226 526 SUPERFAMILY ARM repeat 198 517 IPR016024 -
Lal21g0226 526 ProSiteProfiles Pumilio RNA-binding repeat profile. 239 274 IPR001313 GO:0003723
Lal21g0226 526 ProSiteProfiles Pumilio RNA-binding repeat profile. 423 459 IPR001313 GO:0003723
Lal21g0226 526 ProSiteProfiles Pumilio RNA-binding repeat profile. 460 496 IPR001313 GO:0003723
Lal21g0226 526 Pfam Pumilio-family RNA binding repeat 395 408 IPR001313 GO:0003723
Lal21g0226 526 Pfam Pumilio-family RNA binding repeat 284 312 IPR001313 GO:0003723
Lal21g0226 526 Pfam Pumilio-family RNA binding repeat 321 349 IPR001313 GO:0003723
Lal21g0226 526 Pfam Pumilio-family RNA binding repeat 468 496 IPR001313 GO:0003723
Lal21g0226 526 Pfam Pumilio-family RNA binding repeat 355 389 IPR001313 GO:0003723
Lal21g0226 526 Pfam Pumilio-family RNA binding repeat 243 274 IPR001313 GO:0003723
Lal21g0226 526 Pfam Pumilio-family RNA binding repeat 428 461 IPR001313 GO:0003723
Lal21g0226 526 ProSiteProfiles Pumilio RNA-binding repeat profile. 350 386 IPR001313 GO:0003723
Lal21g0226 526 SMART pum_5 315 350 IPR001313 GO:0003723
Lal21g0226 526 SMART pum_5 387 422 IPR001313 GO:0003723
Lal21g0226 526 SMART pum_5 278 313 IPR001313 GO:0003723
Lal21g0226 526 SMART pum_5 239 274 IPR001313 GO:0003723
Lal21g0226 526 SMART pum_5 423 458 IPR001313 GO:0003723
Lal21g0226 526 SMART pum_5 461 496 IPR001313 GO:0003723
Lal21g0226 526 SMART pum_5 351 386 IPR001313 GO:0003723
Lal21g0226 526 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 176 522 IPR033133 GO:0003723
Lal21g0226 526 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 62 517 - -
Lal21g0226 526 Gene3D - 193 521 IPR011989 -
Lal21g0226 526 ProSiteProfiles Pumilio RNA-binding repeat profile. 387 422 IPR001313 GO:0003723
Lal21g0226 526 CDD Pumilio 204 517 IPR033712 GO:0003723
Lal21g0226 526 PANTHER PUMILIO HOMOLOG 15 62 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0226 Lal-Chr21 1492170 1495135 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0226 - - lang:109343871 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0226 21 1492170 1495135 Lal21g0226 21 1492170 1495135 ECH
Lal21g0226 21 1492170 1495135 Lal4g0138 4 866453 869096 LSH