Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal4g0077 | ATGTCTTCTTCTTCTTCTTCTTCAGTTCTTAAGGAAGAGAAGGAGGATGAAGCGGTGAAAGGGGGAGAACTATTGTTTTGCGGTGCCACGTGTTGGGATATGATTGGTCGTAAAAAAGGCATCGAAGGTAACTTGGTCTCCCCCTCCCGCCTCCGTCCTCTCATCGGCGTCGATATTCGCTACGTTGTCTCCGGTTGCGCATCTTGTCATTGCGTTGCATTGGATGTTGAAGGGCGTTGCTATACATGGGGCCGTAATGATAAGGGGCAACTGGGTCATGGAGATAACATTCAGCGTGATAGGCCAACTGTGGTGTCTGGACTTTCTAAATACAAGATTCTCAAAGCTGGATCAGGGAGGAGTCATACAGTGGTTGTTACAGATGATGGAAATTCCCTAGCCTTTGGATGGAACAAGCATGGACAGCTCGGTGTAGGTTCTGTGCGAAATGAAATTGAACCATCTCCTGTTCGCTGTCTTGTGTCTGAAGTAACATATACTACTTGTGGTGGTGACTTCACCGTGTGGTTATCTTCTGTTGAAGGATCTTCTATACTGACTGCTGGACTTCCACAGTATGGACAGCTTGGACATGGAACAGATAATGAGTACAATTCCAAAGACGGTTCTGTAAGGTTGGTTTATGAAGCCCAGCCACGTCCCCGGGCAATTGCATCTCTTGCTGGTGAAACTATTGTCAAAGTGGCATGTGGAACAAATCACACAGTGACGGTGGATAAGAATGGCTATGTCTACACGTGGGGTTTCGGTGGTTATGGAAGACTAGGGCATAGGGAGCAGAAGGACGAGTGGGCCCCACGTCGTGTTGATATCTTCCAGAATAGAAATGTTTTGCCTCCTGATGCAATTATTTCAGCTGGTTCTGTGAATTCTGCATGTACTGCTGTTGGAGGGCAGTTGTATATGTGGGGCAAATTAAAGAACAATGGTGATGACTGGATGTATCCTAAGCCTCTAATGGATTTAAGTGGCTGGAATTTACGATGCATGGATTCAGGCGGTATGCACCATTTTGTTGGGGCTGATTCCTCATGCATAAGCTGGGGCCAAGCTCAGAACGGAGAGCTGGGATATGGACCTATGGGACAAAAGTCTTCAGCGGTACCCAAAAAGGTGGATATACTTGAGGGCATGCATGTTATGAGTGTTGCTTGTGGTATGGCTCATTCCATGGTTATTGTCAATAGAACAAATGTTGCTGATCGACTTGAGCAGCTTGATGTATATGATGGAAAAGCTATTGGTGAAGCAAATGAGCCTGCAGCCAAAACTCCAGTGCCTAAGCAGACTGCAAAAAAGGGTGCAAAAGGAGCTGACAATTCAAAGAAGAGGAAAAATGCAAAAGATTCATCTGACGAGGAAGAGGATGAGGATTCTGAAGAGAGTGACAATAGTGACGATGATCAAGTTAATGGCGAGGCTGAGGTAAAAAGGGCAGGTAGAGGCCGAAGCAAGGCTTCAGCATCCAAAAATAGCAGCTCTGGTCGAGGCCGAGGACGTGGACGCCCTCCAGTGTCTCCTCCAGTGAAATCATCTGGCAAGAGAGGTAGACCTCGAAAGTCATCATGA | 1590 | 0.4673 | MSSSSSSSVLKEEKEDEAVKGGELLFCGATCWDMIGRKKGIEGNLVSPSRLRPLIGVDIRYVVSGCASCHCVALDVEGRCYTWGRNDKGQLGHGDNIQRDRPTVVSGLSKYKILKAGSGRSHTVVVTDDGNSLAFGWNKHGQLGVGSVRNEIEPSPVRCLVSEVTYTTCGGDFTVWLSSVEGSSILTAGLPQYGQLGHGTDNEYNSKDGSVRLVYEAQPRPRAIASLAGETIVKVACGTNHTVTVDKNGYVYTWGFGGYGRLGHREQKDEWAPRRVDIFQNRNVLPPDAIISAGSVNSACTAVGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGGMHHFVGADSSCISWGQAQNGELGYGPMGQKSSAVPKKVDILEGMHVMSVACGMAHSMVIVNRTNVADRLEQLDVYDGKAIGEANEPAAKTPVPKQTAKKGAKGADNSKKRKNAKDSSDEEEDEDSEESDNSDDDQVNGEAEVKRAGRGRSKASASKNSSSGRGRGRGRPPVSPPVKSSGKRGRPRKSS | 529 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal4g0077 | 529 | MobiDBLite | consensus disorder prediction | 442 | 458 | - | - | |
| Lal4g0077 | 529 | MobiDBLite | consensus disorder prediction | 425 | 529 | - | - | |
| Lal4g0077 | 529 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 235 | 245 | IPR000408 | - | |
| Lal4g0077 | 529 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 249 | 304 | IPR000408 | - | |
| Lal4g0077 | 529 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 350 | 403 | IPR000408 | - | |
| Lal4g0077 | 529 | SUPERFAMILY | RCC1/BLIP-II | 21 | 403 | IPR009091 | - | |
| Lal4g0077 | 529 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 116 | 126 | IPR000408 | - | |
| Lal4g0077 | 529 | Gene3D | - | 211 | 441 | IPR009091 | - | |
| Lal4g0077 | 529 | PRINTS | Chromosome condensation regulator RCC1 signature | 79 | 95 | IPR000408 | - | |
| Lal4g0077 | 529 | PRINTS | Chromosome condensation regulator RCC1 signature | 113 | 126 | IPR000408 | - | |
| Lal4g0077 | 529 | PRINTS | Chromosome condensation regulator RCC1 signature | 132 | 148 | IPR000408 | - | |
| Lal4g0077 | 529 | PRINTS | Chromosome condensation regulator RCC1 signature | 235 | 251 | IPR000408 | - | |
| Lal4g0077 | 529 | PRINTS | Chromosome condensation regulator RCC1 signature | 251 | 265 | IPR000408 | - | |
| Lal4g0077 | 529 | Gene3D | - | 4 | 210 | IPR009091 | - | |
| Lal4g0077 | 529 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 186 | 244 | IPR000408 | - | |
| Lal4g0077 | 529 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 248 | 286 | IPR000408 | - | |
| Lal4g0077 | 529 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 354 | 400 | IPR000408 | - | |
| Lal4g0077 | 529 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 77 | 126 | IPR000408 | - | |
| Lal4g0077 | 529 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 129 | 175 | IPR000408 | - | |
| Lal4g0077 | 529 | PANTHER | PROTEIN RCC2 | 12 | 511 | IPR028641 | - | |
| Lal4g0077 | 529 | MobiDBLite | consensus disorder prediction | 459 | 476 | - | - | |
| Lal4g0077 | 529 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 183 | 248 | IPR000408 | - | |
| Lal4g0077 | 529 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 78 | 129 | IPR000408 | - | |
| Lal4g0077 | 529 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 130 | 180 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal4g0077 | Lal-Chr4 | 455178 | 460753 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal4g0077 | - | - | gmx:100819842 | 847.425 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal4g0077 | 4 | 455178 | 460753 | Lal4g0077 | 4 | 455178 | 460753 | ECH | |
| Lal17g0064 | 17 | 374184 | 380542 | Lal4g0077 | 4 | 455178 | 460753 | LSH |