Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0064 ATGTCCATTACTTGCGCGGAAGAAAAGGAGAATGAAGCGGTGAAAGGCGGAGAGCTATTGTTCTGTGGTGCCACGTGTTGGGATATGGTTGGTCGTAAAAAAGGTATCGACGGTAACTTGGTTTCCCCCTCCCGCCTCCGTCCTCTCATCGGCATCAATATTCGTTACATTGCCGCCGGTTGCGCATCTTGTCATTGCGTTGCATTGGATGTTGAAGGGCGTTGCTATACATGGGGCCGTAATGATAAGGGGCAACTGGGTCACGGAGATAACATTCAGCGTGATAGGCCGACTGTGGTGTCTGAACTTTCCAAGTACAAGATTGTCAAAGCTGGAGCAGGGAAGAGTCATACAGTGGTTGTTACAGAGGATGGAAATGCCCTGGCCTTTGGATGGAACAAGCATGGACAGCTTGGTTCAGGTTCTGCACGAAATGAAATTGAGTCAACTCCCGTTCGCTGTCTCGTGTCTGAAGTAACATATACTACTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCCATTGAAGGATCTTCTATACTGACTGCCGGACTTCCACAGTATGGACAGCTTGGGCATGGAACAGATAATGAGTATAATTCCAAAGACAGCTCTGTGAAGTTGGTTTATGAGGCCCAGCCACGTCCTCGGGCAATTGCTTCTCTTGCTGGTGAAAATATTGTAAAAGTGGCATGTGGAACAAATCACACAGTGGCGGTCGATAAGAATGGCTACGTCTACACGTGGGGTTTTGGTGGTTATGGAAGGTTGGTGCTTAGTTTTCAGATTAGTCTACTAGGGCACAGGGAGCAGAAGGATGAGTGGGCCCCACGTCGTGTTGACATTTTCCAGAATAGAAATGTTTTGCCTCCTGATGCAATTATTTCAGCTGGTTCTGTGAGTTCTGCATGTACTGCAGCTGGAGGGCAGTTGTATATGTGGGGCAAATTAAAGAGCAATGGTGATGACTGGATGTATCCTAAGCCTCTAATGGATTTAAGGTTGTGCTTTATTCCATGTGGTTGGAATATACGATGCATGGATTCAGGTGGTATGCACCATTTTGTCGGGGCTGATTCGTCATGCATAAGCTGGGGCCAAGCTCAGAACGGAGAGCTGGGATATGGACCTATGGGACAAAAATCATCAGCTATACCCAAAAAAGTGGATATACTTGAGGGCTTGCATGTTATGAGTGTTGCTTGTGGTATGGCCCACTCCATGGTTATTGTGGACAGAGCAAATGTTGTTGAACGACTTGACCAGCTTGATGTATATGATGGAAAAGCTTTTGGTGAAGGGAATGTGCCTGCAACTGAAACTCCAGTGCCTATACAGACTGCAAAAAAGGTTGCAAAAGAAGCTAACAATTCGAAGAAGAGGAAAAAAGCAAAAGATTCATCGGACGAGGAAGAGGATGAAGATATCGAAGAGAGTGATAGTAGTGACGAGGATCAAGTCAATGGCGAGTCTGAGGTAAAAAGGGCAGGTAGAGGCCGGGGTAAGGCATCAACATCCAAAAAGTCAGGTGCCAATGGAAAAGGTTCCGGCCGAGGGCGTGGTCGCCCTCCAGTAAGAAATAAGAGCAGTTCTAAGGCACCTCCAGTGAAATCAGCTGGCAAGAGAGGAAGACCTCGTAAGTCCTCATGA 1650 0.4697 MSITCAEEKENEAVKGGELLFCGATCWDMVGRKKGIDGNLVSPSRLRPLIGINIRYIAAGCASCHCVALDVEGRCYTWGRNDKGQLGHGDNIQRDRPTVVSELSKYKIVKAGAGKSHTVVVTEDGNALAFGWNKHGQLGSGSARNEIESTPVRCLVSEVTYTTCGGDFTVWLSSIEGSSILTAGLPQYGQLGHGTDNEYNSKDSSVKLVYEAQPRPRAIASLAGENIVKVACGTNHTVAVDKNGYVYTWGFGGYGRLVLSFQISLLGHREQKDEWAPRRVDIFQNRNVLPPDAIISAGSVSSACTAAGGQLYMWGKLKSNGDDWMYPKPLMDLRLCFIPCGWNIRCMDSGGMHHFVGADSSCISWGQAQNGELGYGPMGQKSSAIPKKVDILEGLHVMSVACGMAHSMVIVDRANVVERLDQLDVYDGKAFGEGNVPATETPVPIQTAKKVAKEANNSKKRKKAKDSSDEEEDEDIEESDSSDEDQVNGESEVKRAGRGRGKASTSKKSGANGKGSGRGRGRPPVRNKSSSKAPPVKSAGKRGRPRKSS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0064 549 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 111 121 IPR000408 -
Lal17g0064 549 Gene3D - 2 155 IPR009091 -
Lal17g0064 549 Gene3D - 159 435 IPR009091 -
Lal17g0064 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 178 243 IPR000408 -
Lal17g0064 549 MobiDBLite consensus disorder prediction 470 486 - -
Lal17g0064 549 SUPERFAMILY RCC1/BLIP-II 16 413 IPR009091 -
Lal17g0064 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 125 175 IPR000408 -
Lal17g0064 549 Coils Coil 445 465 - -
Lal17g0064 549 MobiDBLite consensus disorder prediction 429 549 - -
Lal17g0064 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 73 124 IPR000408 -
Lal17g0064 549 PANTHER PROTEIN RCC2 8 532 IPR028641 -
Lal17g0064 549 Pfam Regulator of chromosome condensation (RCC1) repeat 181 240 IPR000408 -
Lal17g0064 549 Pfam Regulator of chromosome condensation (RCC1) repeat 364 410 IPR000408 -
Lal17g0064 549 Pfam Regulator of chromosome condensation (RCC1) repeat 72 121 IPR000408 -
Lal17g0064 549 Pfam Regulator of chromosome condensation (RCC1) repeat 124 170 IPR000408 -
Lal17g0064 549 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 230 240 IPR000408 -
Lal17g0064 549 PRINTS Chromosome condensation regulator RCC1 signature 74 90 IPR000408 -
Lal17g0064 549 PRINTS Chromosome condensation regulator RCC1 signature 108 121 IPR000408 -
Lal17g0064 549 PRINTS Chromosome condensation regulator RCC1 signature 127 143 IPR000408 -
Lal17g0064 549 PRINTS Chromosome condensation regulator RCC1 signature 230 246 IPR000408 -
Lal17g0064 549 PRINTS Chromosome condensation regulator RCC1 signature 246 260 IPR000408 -
Lal17g0064 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 360 413 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0064 Lal-Chr17 374184 380542 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0064 - - pvu:PHAVU_009G015100g 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0064 17 374184 380542 Lal17g0064 17 374184 380542 ECH
Lal17g0064 17 374184 380542 Lal4g0077 4 455178 460753 LSH