Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1400 ATGATCATCTCACCTTGCATGATAAAACGTAACCACAATTTTCCATATATATACAACACAACACTACTATTCATTTTACTCTCAACAACATTCAACAATAAACCTAAGCCCTCTCTATCATATTCTTCACCTCAACAAATGGCACCACCTCAGTTTATTCAAACCGTCGCTAAATCTGCTTTACCAACGCTTCCACGCCGTGCCTACGTCACGTTTCTCGCCGGAAACGGTGACTATGTGAAAGGTGTTGTCGGTTTAGCCAAAGGGCTAAGGAAGGTTAAAACTATCTACCCTTTGGTTGTGGCGGTGCTCCCTGATGTACCCAGAGAGCACCGCCAGATTTTGGAGTCTCACGGATGTATAGTCCGTGAGATTCAACCGGTTTATCCACCTCAGAATGAGACTCAATATGCTATGGCATATTATGTTATCAATTATTCTAAGCTCCGTATATGGGAGTTTGTGGAATACAAGAAGATGATATACTTAGATGGAGACATTCAAGTATATGAAAACATAGATCACTTATTTGACATGCAAGATGGTCATTTTTACGCAGTAATGGATTGTTTCTGTGAGAAGACATGGAATCACACACCACAATACAAAATAGGGTATTGCCAACAATGCCCAAACAAGGTTCAATGGCCTATAGAATTAGGTCAACCACCTTCCCTATACTTCAATGCTGGAATGTTTGTGTTTCAACCTTGCATTCATACTTACTATGACCTTTTGAGTACCCTACAAGTTATTACTCCTACCCCATTTGCAGAGCAAGATTTCTTGAACATGTACTTTAAGGACATTTATAAACCTATTCCATTGGTTTATAACTTTGTTCTTGCTATGTTGTGGCGTCACCCTGAGAATTTTGACCTTCATAAAGTTAAGGTTGTTCACTACTGTGCAGCGGGATCAAAGCCATGGAGGTACACAGGGAAGGAAGAGAATATGCAAAGAGAGGACATAAAGATGTTGGTTAAGAAATGGTGGGACATTTATAATGATGATTCCCTTAATTACAAGGAACCATTGAGTGAGAATGAAGTATCAATAGTTGGTGTTGAAATGGAACCATTCTCATCACAAGCTATATCAGTGGTTGGCCAGGTTCAATATGTAAAAGCACCCTCAGCAGCTTAA 1146 0.397 MIISPCMIKRNHNFPYIYNTTLLFILLSTTFNNKPKPSLSYSSPQQMAPPQFIQTVAKSALPTLPRRAYVTFLAGNGDYVKGVVGLAKGLRKVKTIYPLVVAVLPDVPREHRQILESHGCIVREIQPVYPPQNETQYAMAYYVINYSKLRIWEFVEYKKMIYLDGDIQVYENIDHLFDMQDGHFYAVMDCFCEKTWNHTPQYKIGYCQQCPNKVQWPIELGQPPSLYFNAGMFVFQPCIHTYYDLLSTLQVITPTPFAEQDFLNMYFKDIYKPIPLVYNFVLAMLWRHPENFDLHKVKVVHYCAAGSKPWRYTGKEENMQREDIKMLVKKWWDIYNDDSLNYKEPLSENEVSIVGVEMEPFSSQAISVVGQVQYVKAPSAA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1400 381 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 64 341 IPR029044 -
Lal3g1400 381 PANTHER GALACTINOL SYNTHASE 1 56 381 - -
Lal3g1400 381 Pfam Glycosyl transferase family 8 71 313 IPR002495 GO:0016757
Lal3g1400 381 PANTHER GLYCOGENIN SUBFAMILY MEMBER 56 381 - -
Lal3g1400 381 SUPERFAMILY Nucleotide-diphospho-sugar transferases 69 344 IPR029044 -
Lal3g1400 381 CDD GT8_Glycogenin 67 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1400 Lal-Chr3 19922252 19925332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1400 66 381 Glycosyltransferase AT1G56600 71.429 3.56e-175 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1400 K18819 - gmx:100819991 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1400 3 19922252 19925332 Lal3g1400 3 19922252 19925332 ECH
Lal3g1400 3 19922252 19925332 Lal5g0221 5 1890492 1895114 LSH