Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0919 ATGGTGTCATGGTGCGCTGCAAAGTGCTTCCGTCTCCCGGCGATGGACGTCGGCGTTATTCGCCGTCGTGCTTCTTTTGCTGCCGGAATTGTCGGAGGAGCTTCTATGGCCGGCGCTGCCTTGTGTCGTTCCTCTTTTACTAAGAGCTCAGCCCCTTTCGCTTCCTTGAGCATTTCCACTCATACCAGCATCAAGGAAGCTGTTCACACTGAAAAGGCACCAGCCGCATTGGGGCCATATTCTCAAGCAATCAAAGCCAATAATCTTCTGTTTGTGTCAGGAGTTCTTGGTCTTGTTCCTGAGACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAAACAGAGCAGCTTCTAAAAAATATGGGGGAGATCCTAAAATCTGGTGGTGCCAGCTACTCATCGGTCGTTAAGACAACAATTTTGTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATATTTCCCTTTACCTCCCCCAGCTCGTTCAACATATCAAGTGGCTGCATTGCCATTGGATGCCAAGATTGAAATTGAGTGTATAGCAGCACTATGA 567 0.4691 MVSWCAAKCFRLPAMDVGVIRRRASFAAGIVGGASMAGAALCRSSFTKSSAPFASLSISTHTSIKEAVHTEKAPAALGPYSQAIKANNLLFVSGVLGLVPETGKFISDNVEDQTEQLLKNMGEILKSGGASYSSVVKTTILLADLKDFKKVNEIYAKYFPLPPPARSTYQVAALPLDAKIEIECIAAL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0919 188 Pfam Endoribonuclease L-PSP 71 187 IPR006175 -
Lal3g0919 188 SUPERFAMILY YjgF-like 65 188 IPR035959 -
Lal3g0919 188 ProSitePatterns Uncharacterized protein family UPF0076 signature. 164 182 IPR019897 -
Lal3g0919 188 Gene3D - 62 188 IPR035959 -
Lal3g0919 188 TIGRFAM TIGR00004: reactive intermediate/imine deaminase 65 187 IPR006056 -
Lal3g0919 188 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 23 188 IPR006175 -
Lal3g0919 188 PANTHER BNAA05G36080D PROTEIN 23 188 - -
Lal3g0919 188 CDD YjgF_YER057c_UK114_family 80 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0919 Lal-Chr3 9309822 9314365 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0919 K09022 - gmx:100785544 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0919 3 9309822 9314365 Lal3g0919 3 9309822 9314365 ECH
Lal3g0919 3 9309822 9314365 Lal11g1067 11 14292832 14297520 LSH