Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal3g0556 | ATGACCTTCGAGAAAGTTCTGAAAAACTCGTGGCCACAAACGGCCATAGCATCTAACGGTCAACAATACGCCACGTGGAGATATCACCACGTGGGCATCCTACGTGGCACACTCCTTCCTCTGAAAATGATACGCCTCATTTCACCATTCATTAGGTCACTTTCTTCTTCACTCCAAAACCAAAATCTGAGGCCAAAGTTTCGAACTTTATTGCATTCTGATTCTGATTTTGATTTTTTTATGGCTATGAGTAGTGATGGGAATGAGCCATTCAAGAAAAAGAGGTTGGCGTATATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGCTATTGACTCCGGTACTTGTTAGGGTTCCGCCGCCGCCTACTTACTCGTGGGTGGATGTTTCCGGCGGTGGTTGTGGATTTGCTATGGCTATCTCTGAGTCAGGGAAGCTCATAACTTGGGGTTCAACTGATGATCTAGGCCAAAGCTATGTGACATCTGGCAAGCATGGGGAAACTCCAGAGCCCTTTCCTCTCCCAACTGATGCATCTATTGTAAAAGCTGCAGCTGGATGGGCACATTGTGTTGCTGTAACAGATTGTGGAGAGGTGTACACATGGGGATGGAAAGAATGTGTTCCCTCTGGAAAGGTAATTGCTGAACCATCAGCGGTGGTAAGTGTTGAAAAAGATGTACCAGGAAGGCAGAGTTTATTCTTGAAGGAGCAAGTGAGCCCTCATTCTCAAGGCTCAAAATCTACTGCAGGAACTGTCACCAGCACTAGTGGAGAAGAAAATACAAAGCGAAGGAGAATATCTTCAGCGAAGCAAGCAGCTGAAACCTCATCATCTGGTGATGATGTTCTGACGGCATTGCCATGTCTTGTCACACTAAACCCAGGGGTAAGGATATCAAGTGTTGCTGCTGGTGGACGCCACACCCTAGCTTTATCAGATATTGGGCAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGACAACTTGGTTTGGGATCCAGAGTACGTATGGTGCCGTCTCCTCATCTTCTTCCTTGTATTGATTCCTCTTCTTATGTTAAAGATAGCTCAGTGTCACTGGTTCAAGGAAGCATGAATTCAGATGGACATAATTTAAGAGTTCCTGGAAGTTATGTAAAAGGAATTGCCTGTGGAGGTCGACACAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTGCTTTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGACGATGAACTGAGACCGACTTGCGTATCTTCCTTATTGGGTATCCGAATAGAGGGAGTTGCTGCAGGACTGTGGCATACTGTCTGTACATCTGCTGATGGTGATGTCTATGCATTTGGTGGAAACCAATTTGGGCAGCTGGGAACCGGTGTTGATCAAGCTGAGACTCTACCAAAGCTACTGGATTGTCCGAGCTTGGAAAATGTGAATATAAAAAGTGTATCTTGTGGGGCTCGTCATACTGCTGCAGTGACAGATGATGGGAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGCTGGGGCTTGGGGACGTGATTGACCGGAATATTCCTTCTGAAGTCACCATTGAAGGTTGCGCCGCGAAAAATGTTGCATGTGGCTGGTGGCACACTCTTCTCCTGGCCGAATCACCCACCTGA | 1674 | 0.4755 | MTFEKVLKNSWPQTAIASNGQQYATWRYHHVGILRGTLLPLKMIRLISPFIRSLSSSLQNQNLRPKFRTLLHSDSDFDFFMAMSSDGNEPFKKKRLAYMWGYLPGALPQRTPLLTPVLVRVPPPPTYSWVDVSGGGCGFAMAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTDASIVKAAAGWAHCVAVTDCGEVYTWGWKECVPSGKVIAEPSAVVSVEKDVPGRQSLFLKEQVSPHSQGSKSTAGTVTSTSGEENTKRRRISSAKQAAETSSSGDDVLTALPCLVTLNPGVRISSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRMVPSPHLLPCIDSSSYVKDSSVSLVQGSMNSDGHNLRVPGSYVKGIACGGRHSAVITDAGAVLAFGWGLYGQCGQGSTDDELRPTCVSSLLGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGVDQAETLPKLLDCPSLENVNIKSVSCGARHTAAVTDDGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCAAKNVACGWWHTLLLAESPT | 557 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal3g0556 | 557 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 451 | 504 | IPR000408 | - | |
| Lal3g0556 | 557 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 302 | 331 | - | - | |
| Lal3g0556 | 557 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 92 | 557 | - | - | |
| Lal3g0556 | 557 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN | 92 | 557 | - | - | |
| Lal3g0556 | 557 | PRINTS | Chromosome condensation regulator RCC1 signature | 183 | 196 | IPR000408 | - | |
| Lal3g0556 | 557 | PRINTS | Chromosome condensation regulator RCC1 signature | 202 | 218 | IPR000408 | - | |
| Lal3g0556 | 557 | PRINTS | Chromosome condensation regulator RCC1 signature | 305 | 321 | IPR000408 | - | |
| Lal3g0556 | 557 | PRINTS | Chromosome condensation regulator RCC1 signature | 440 | 458 | IPR000408 | - | |
| Lal3g0556 | 557 | PRINTS | Chromosome condensation regulator RCC1 signature | 500 | 521 | IPR000408 | - | |
| Lal3g0556 | 557 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 491 | 501 | IPR000408 | - | |
| Lal3g0556 | 557 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 319 | 398 | IPR000408 | - | |
| Lal3g0556 | 557 | MobiDBLite | consensus disorder prediction | 239 | 261 | - | - | |
| Lal3g0556 | 557 | SUPERFAMILY | RCC1/BLIP-II | 78 | 210 | IPR009091 | - | |
| Lal3g0556 | 557 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 305 | 315 | IPR000408 | - | |
| Lal3g0556 | 557 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 147 | 199 | IPR000408 | - | |
| Lal3g0556 | 557 | Gene3D | - | 248 | 360 | IPR009091 | - | |
| Lal3g0556 | 557 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 505 | 555 | IPR000408 | - | |
| Lal3g0556 | 557 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 450 | 501 | IPR000408 | - | |
| Lal3g0556 | 557 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 399 | 446 | IPR000408 | - | |
| Lal3g0556 | 557 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 504 | 552 | IPR000408 | - | |
| Lal3g0556 | 557 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 385 | 395 | IPR000408 | - | |
| Lal3g0556 | 557 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 399 | 450 | IPR000408 | - | |
| Lal3g0556 | 557 | MobiDBLite | consensus disorder prediction | 239 | 279 | - | - | |
| Lal3g0556 | 557 | Gene3D | - | 71 | 232 | IPR009091 | - | |
| Lal3g0556 | 557 | SUPERFAMILY | RCC1/BLIP-II | 288 | 554 | IPR009091 | - | |
| Lal3g0556 | 557 | Gene3D | - | 361 | 557 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal3g0556 | Lal-Chr3 | 4195774 | 4203131 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal3g0556 | - | - | gmx:100778841 | 803.127 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal3g0556 | 3 | 4195774 | 4203131 | Lal3g0556 | 3 | 4195774 | 4203131 | ECH | |
| Lal3g0556 | 3 | 4195774 | 4203131 | Lal18g1342 | 18 | 15860489 | 15864879 | LSH | |
| Lal3g0556 | 3 | 4195774 | 4203131 | Lal18g1342 | 18 | 15860489 | 15864879 | PCT | |
| Lal18g1342 | 18 | 15860489 | 15864879 | Lal3g0556 | 3 | 4195774 | 4203131 | PCT |