Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1342 ATGAATGTAAGTGGAGGAGTTGAGGTAAGACATTCTCAGAAAATGGTTTACATGTGGGGTTATCTTCCCGGTGCTACGCCGCAGAGGATGCCTCTGTTGTCTCCGGCGGAGGTTACATTTCCGGGGAGTTGCTGTTATTCATGGAATGATGTTTGCGGTGGTGGCTGTGGATTTGCAATGGCTCTATGCGAGTCAGGAAAACTCATCACATGGGGTTCAACTAATGATCTAGGCCAAAGCTATCTAACTTCAGGCAAACATGGGGAAACTCCAGAGCCTTTCCCTCTTCCTCCTGAAGCCTATATTGTAAAAGCTGCGGCTGGATGGGCTCATTGTGTTGCTGTAACAGATTGTGGAGAAGTTTACACATGGGGATGGAAGGAATGTATACCCTCTGGGAAGGTATTTGGTGAACCATCTATAGGGATAAGTCTTGAACAAGATGTACCAGGATGGCAGAGTTCATTGTCAACAGAGCAAGTGAGCCCTCGTTGTCAAGGTTCAAGATCTACTGGGGGTACTGCCTCGACTACCAGTGGAGAAGAGAGCACAAAGCGCCGGAGAGTCACTTCAGCAAAGCAAACTGCTGAAAGCTCGTCATCTGGTGATGATACTCTGACAGCATTGCCTTGTCTTGTCACACTAAACCCGGGGGTAAGGATAGCAAGTGTTGCTGCTGGTGGACGTCATACCTTAGCATTGTCAGATATAGGACAGGTTTGGGGTTGGGGCTATGGAGGTGAAGGTCAGCTTGGTTTGGGTTCCAGAATACGTATGGTCTCCTCTCCTCATCTTGTTCCTTGTATTGATTCCTCTTCTTATGGTAAAGATAGATCTATAACACTGGCTCGAGGAAGAATGTGCTCAGAGGGACAGAGTTTAAGAGCTCCTGGAAGTTATATAAAGAGCATTGCTTGTGGAGGTCGACACAGTGTGGTGATTACAGATGCTGGAGCTTTGCTTACTTTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAACTACAGATGATGAACTAAGCCCGACTTGCGTATCTTCCCTCTTGGGTATCCGAATAGATGGAGTCGCTGCAGGACTATGGCATACCGTATGTACATCTGCTGCTGGTGATGTATATGTGTTTGGTGGGAATCAATTTGGGCAACTGGGAACCGGCTCTGATCAAGCCGAGGTTCTACCGAGACTAGTGGATTCTCCGAATTTGGAAAACATGCATGCAAAGAACATATCTTGTGGGTCGCGTCATACCGCTTTACTAACAGAGGGTGGCAAAGTCTTCTGCTGGGGATGGAACAAATATGGACAGCTCGGCCTCGGGGACATGATTGACCGTAACCTACCTTCTGAGGTCACCATTGAAGGTTGTGTCCCTAAAAATGTTGCTTGTGGTTGGTGGCATACTCTTCTTCTGGCCTGA 1419 0.4778 MNVSGGVEVRHSQKMVYMWGYLPGATPQRMPLLSPAEVTFPGSCCYSWNDVCGGGCGFAMALCESGKLITWGSTNDLGQSYLTSGKHGETPEPFPLPPEAYIVKAAAGWAHCVAVTDCGEVYTWGWKECIPSGKVFGEPSIGISLEQDVPGWQSSLSTEQVSPRCQGSRSTGGTASTTSGEESTKRRRVTSAKQTAESSSSGDDTLTALPCLVTLNPGVRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCIDSSSYGKDRSITLARGRMCSEGQSLRAPGSYIKSIACGGRHSVVITDAGALLTFGWGLYGQCGQGTTDDELSPTCVSSLLGIRIDGVAAGLWHTVCTSAAGDVYVFGGNQFGQLGTGSDQAEVLPRLVDSPNLENMHAKNISCGSRHTALLTEGGKVFCWGWNKYGQLGLGDMIDRNLPSEVTIEGCVPKNVACGWWHTLLLA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1342 472 MobiDBLite consensus disorder prediction 155 180 - -
Lal18g1342 472 Gene3D - 165 283 IPR009091 -
Lal18g1342 472 Pfam Regulator of chromosome condensation (RCC1) repeat 370 420 IPR000408 -
Lal18g1342 472 Pfam Regulator of chromosome condensation (RCC1) repeat 424 471 IPR000408 -
Lal18g1342 472 Pfam Regulator of chromosome condensation (RCC1) repeat 318 365 IPR000408 -
Lal18g1342 472 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 11 472 - -
Lal18g1342 472 Gene3D - 286 472 IPR009091 -
Lal18g1342 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 423 IPR000408 -
Lal18g1342 472 MobiDBLite consensus disorder prediction 155 203 - -
Lal18g1342 472 SUPERFAMILY RCC1/BLIP-II 16 471 IPR009091 -
Lal18g1342 472 Pfam Regulator of chromosome condensation (RCC1) repeat 221 250 - -
Lal18g1342 472 PRINTS Chromosome condensation regulator RCC1 signature 221 234 IPR000408 -
Lal18g1342 472 PRINTS Chromosome condensation regulator RCC1 signature 240 256 IPR000408 -
Lal18g1342 472 PRINTS Chromosome condensation regulator RCC1 signature 356 372 IPR000408 -
Lal18g1342 472 PRINTS Chromosome condensation regulator RCC1 signature 372 386 IPR000408 -
Lal18g1342 472 PRINTS Chromosome condensation regulator RCC1 signature 464 472 IPR000408 -
Lal18g1342 472 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 304 314 IPR000408 -
Lal18g1342 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 424 472 IPR000408 -
Lal18g1342 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Lal18g1342 472 Gene3D - 9 135 IPR009091 -
Lal18g1342 472 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 224 234 IPR000408 -
Lal18g1342 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 317 IPR000408 -
Lal18g1342 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Lal18g1342 472 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 11 472 - -
Lal18g1342 472 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 410 420 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1342 Lal-Chr18 15860489 15864879 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1342 - - gmx:100807837 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1342 18 15860489 15864879 Lal18g1342 18 15860489 15864879 ECH
Lal3g0556 3 4195774 4203131 Lal18g1342 18 15860489 15864879 LSH
Lal3g0556 3 4195774 4203131 Lal18g1342 18 15860489 15864879 PCT
Lal18g1342 18 15860489 15864879 Lal18g1342 18 15860489 15864879 PCT
Lal18g1342 18 15860489 15864879 Lal3g0556 3 4195774 4203131 PCT