Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0526 ATGGCTATGTATTTTCTTCTGCTACTTTTTGCAATGTCTGTTGTTGCTGCATCTGATGAAGAACCTTTTATTGGAGTAAATGTTGGAACATTTCTATCAGATATGCCTCATCCTACTCAAGTAGTGGCACTACTTAAGGCTCAGAAAATTCAACATGTTCGGTTGTATGATGCTGACCAAGCTATGCTCATTGCACTTGCAAAAACAGGAATTCAAGTTTCTATCTCTGTCCCTAACGAAGAGCTCCTAGCAATTGGTCAATCAAATTCCACTGCTGCTAACTGGGTTTCGCGCAACGTGGTAGCGCATTATCCAGCCACCGATATCATATCTATCTGCGTTGGTTCTGAGGTCTTAACTTCAATGCCTAATGCAGCAAAAGTGCTTGTCAACGCGCTTAAGTACATTCATTCAGCCCTCGTGGCTGCCAATCTTGATCGCAAAATCAAAGTTTCAACACCCCTTTCATCTTCCATTATCCTTGATTCATTTCCACCTTCCCAAGCTTTTTTTAACCGATCGCTGAATCCAGTCCTAGTCCCGATGCTTGATTTCTTGCAATCCACAGGCTCTTATCTCATGCTCAATATATACCCTTACTATGACTATATGCAATCAAATGGTGCAATTTCATTGGAATATGCACTCTTCAAACCTCTCCCTCCAAACAAAGAAGCTGTTGATTCTAATACTCTTCTTCATTACTCCAATGTTTTTGATGCTGTGGTTGATGCAGCATACTTTGCCATGTCTTTTATAAATTACACTAACATTCCTATAGTAGTGACAGAGACAGGATGGCCCTCAAAAGGTGATTCTAATGAGCCTGATGCCACATTAGACAATGCCAATACTTACAACAGCAATTTGATCAAACATGTGCTTAACTCAACTGGAACTCCAAAAAATCCCGGAATCGCTACTAGTACTTACATCTATGAGCTTTACAACGAGGATATGAAGCAAGGGCCGTTGTCAGAGAAGAATTGGGGATTGTTTGATGAAAATGGTGTGCCTATTTACATTTTACACTTGACAGGATCAGGTGCAGTGTTAGCAAATGATACCACCAATCAAACATACTGCATTGCAAAGGATGAGGCCGATCCGAAGATGCTGCAGGCTGGAATAGATTGGGCATGTGGAGCTGGCAAGGTGGATTGCTCTCCAATGCTGCAGGGACAACCATGCTATGAACCAGACAATGTGATTGCACATGCAAATTATGCTTTTGACACTTATTTTCATCAGATGGGAAAGTCTCCTGAGTCATGTGACTTCAATGAAATGGCTACAATCTCCACTTCAGATCCAAGTCATGGTTCTTGTGTATTCCCGGGAAGCCTTGGAAATAATGGCACCTTCTCTAACATCACTGGAGCGTCACTAAATTCGACGAATTCAATTTCTTCTGCATGCAATCTCCACAGAATTGATTTGAGAATTAGAGATCTTCTCATGGTGATAGGATTGATAGCATTGGGAGTGGTTTTGCTGTAA 1500 0.4133 MAMYFLLLLFAMSVVAASDEEPFIGVNVGTFLSDMPHPTQVVALLKAQKIQHVRLYDADQAMLIALAKTGIQVSISVPNEELLAIGQSNSTAANWVSRNVVAHYPATDIISICVGSEVLTSMPNAAKVLVNALKYIHSALVAANLDRKIKVSTPLSSSIILDSFPPSQAFFNRSLNPVLVPMLDFLQSTGSYLMLNIYPYYDYMQSNGAISLEYALFKPLPPNKEAVDSNTLLHYSNVFDAVVDAAYFAMSFINYTNIPIVVTETGWPSKGDSNEPDATLDNANTYNSNLIKHVLNSTGTPKNPGIATSTYIYELYNEDMKQGPLSEKNWGLFDENGVPIYILHLTGSGAVLANDTTNQTYCIAKDEADPKMLQAGIDWACGAGKVDCSPMLQGQPCYEPDNVIAHANYAFDTYFHQMGKSPESCDFNEMATISTSDPSHGSCVFPGSLGNNGTFSNITGASLNSTNSISSACNLHRIDLRIRDLLMVIGLIALGVVLL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0526 499 SMART X8_cls 360 445 IPR012946 -
Lal3g0526 499 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Lal3g0526 499 Gene3D - 354 446 - -
Lal3g0526 499 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 7 480 IPR044965 GO:0004553|GO:0005975
Lal3g0526 499 Pfam X8 domain 361 432 IPR012946 -
Lal3g0526 499 SUPERFAMILY (Trans)glycosidases 24 343 IPR017853 -
Lal3g0526 499 Gene3D Glycosidases 23 349 - -
Lal3g0526 499 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 7 480 - -
Lal3g0526 499 Pfam Glycosyl hydrolases family 17 24 343 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0526 Lal-Chr3 3852190 3855796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0526 18 468 Glycoside Hydrolase AT1G66250 73.510 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0526 K19891 - gmx:100799965 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0526 3 3852190 3855796 Lal18g1311 18 15627580 15634005 LSH
Lal3g0526 3 3852190 3855796 Lal18g1311 18 15627580 15634005 PCT