Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0153 ATGGCTTCTCTAACTCATCAGTTATGTGCACTTCGTTGTTCTCCACTCCCTTCAACACCATTCCATCACAAACATCATCTTCGCACTTCCTTTGTTTGTTCTTCAATTGCAATTTCAAGTGCTCAAAATAAAGACAGAATTAAACTCAAAGAACTTTTCGATGATGCTTATGAGAGATGTCGCACTGCTCCTATGGAAGGTGTTTCTTTTACCCTCGATAACTTCACTGATGCTCTCGAAAAGTATGACTTCGATTCTGAAGTTGGGACCAAGTTGAAGGTGAAATGGGGTGCGATTGAATTGGAGTTTGTCGTCATGTTTATAATTAAAAAGTTGGACATTTTGGTTCCATTAAGTGGAAGCAAAGAGAACATACAAGAGGTTAAGGGCACTGTATTTGGTACAGATGCTGGTGGAGCTTATGTAGACATTACCGCAAAGTCTACAGCGTACTTGCCCTTGCAAGAGGCATGCATTCACAGAATTAAGCACGTAAATGAGGCAGGCATAGTTTCTGGCGTCAGACAGGAATTTGTAATCATTGGTGAGGTTGAAGCTGATGATAGCTTGATCTTGAGTTTAAAGTCTATCCAGTTTGACCTTTGTTGGGAACGCTGTAGACAACTTCAATCAGAAGATGTTGTTGTCAAGGGTAAGATTGTTGGTGCAAACAAAGGTGGACTGGTGGCAGAGGTGGAAGGCCTTAAGGGGTTTGTGCCATTTTCACAGCTATCAACGAAATCAACTGGAGAAGATCTTCTCGAGAAGGAACTTCCTCTAAAGTTTGTGGAGGTGGATGAGGAACAGTCCAGACTTATCCTCAGTCACCGCAAAGCTGCGGCTGACAGCCAGGGACAACTAGGAATTGGATCAGTTGTCACTGGCACTGTTCAAAGTCTAAAGCCATATGGTGCTTTCATTGACATTGGTGGAATGAGTGGCCTCCTTCACGTCAGCCAGATCAGTCATGATCGTATAACTGATATTGAAACTGTTCTTCAACCTGGTGATACCCTGAAGGTGATGATCTTAAGTCATGATCGGGAGAGAGGCCGAGTTAGTCTTTCCACGAAGAAATTGGAACCCACACCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAAACATTCAGACAGAGGATAGCCCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTGAGCAGTGATGGGATCTTAGGACCACTTACTTCAGACTTGCCTGCAGAGGGACTGGATTTGAGTGAAGTGCCCTCAGCTGTAGATTCCTGA 1323 0.4422 MASLTHQLCALRCSPLPSTPFHHKHHLRTSFVCSSIAISSAQNKDRIKLKELFDDAYERCRTAPMEGVSFTLDNFTDALEKYDFDSEVGTKLKVKWGAIELEFVVMFIIKKLDILVPLSGSKENIQEVKGTVFGTDAGGAYVDITAKSTAYLPLQEACIHRIKHVNEAGIVSGVRQEFVIIGEVEADDSLILSLKSIQFDLCWERCRQLQSEDVVVKGKIVGANKGGLVAEVEGLKGFVPFSQLSTKSTGEDLLEKELPLKFVEVDEEQSRLILSHRKAAADSQGQLGIGSVVTGTVQSLKPYGAFIDIGGMSGLLHVSQISHDRITDIETVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSEVPSAVDS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0153 440 Gene3D - 121 205 IPR012340 -
Lal3g0153 440 ProSiteProfiles S1 domain profile. 125 195 IPR003029 GO:0003676
Lal3g0153 440 Coils Coil 375 395 - -
Lal3g0153 440 CDD S1_RPS1_repeat_hs4 290 358 - -
Lal3g0153 440 Pfam S1 RNA binding domain 213 277 IPR003029 GO:0003676
Lal3g0153 440 Pfam S1 RNA binding domain 289 358 IPR003029 GO:0003676
Lal3g0153 440 CDD S1_RPS1_repeat_ec2_hs2 213 277 - -
Lal3g0153 440 SUPERFAMILY Nucleic acid-binding proteins 208 280 IPR012340 -
Lal3g0153 440 ProSiteProfiles S1 domain profile. 213 277 IPR003029 GO:0003676
Lal3g0153 440 Gene3D - 206 284 IPR012340 -
Lal3g0153 440 Gene3D - 285 362 IPR012340 -
Lal3g0153 440 PANTHER 30S RIBOSOMAL PROTEIN S1 1 99 - -
Lal3g0153 440 PANTHER 30S RIBOSOMAL PROTEIN S1 127 438 - -
Lal3g0153 440 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 127 438 - -
Lal3g0153 440 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 99 - -
Lal3g0153 440 SUPERFAMILY Nucleic acid-binding proteins 289 368 IPR012340 -
Lal3g0153 440 ProSiteProfiles S1 domain profile. 290 358 IPR003029 GO:0003676
Lal3g0153 440 SMART S1_6 211 277 IPR022967 -
Lal3g0153 440 SMART S1_6 288 358 IPR022967 -
Lal3g0153 440 SMART S1_6 123 195 IPR022967 -
Lal3g0153 440 SUPERFAMILY Nucleic acid-binding proteins 127 220 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0153 Lal-Chr3 996146 999774 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0153 K02945 - nnu:104607070 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0153 3 996146 999774 Lal11g0288 11 2038384 2042135 LSH
Lal14g1595 14 16455955 16459398 Lal3g0153 3 996146 999774 PCT
Lal3g0153 3 996146 999774 Lal14g1595 14 16455955 16459398 PCT