Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1595 ATGAGTTGCGTGGGTCAGCAATTGAACCTAAGGTGCTTCTTCCCTTCTTCTTCTTCTTCTTGTTGTTGGTGGTGGAGTAGTAATCTAACTAAGAAGCGAGTTTCGTTTTCCATAGTGAACTCAGTTGCAATATCTAATGCACAGACACAAGAGAGGTTAAAGCTCAAACAACTTTTCCGTGAAGCCAATCAGAGGTGCCTCAATGATCCTATGGATGGCGTTTCCTTCACCCTCCAAGACTTTACTCAAGCCCTAGATCATTATCACTTTCACTCTCAACTTGGTAACAAGGTTATAGGAACTGTGTTCTGCACAGATGACAATGGAGCACTTGTAGAGATTGCTGCAAAATCTGCTGCATATTTGCCCCTACAAGAGGCTTGCATCCATAGAGTTAACCATGTGGAAGAAGCAGGCATAGTTCCTGGGTTCAGAACGGAGTTTTTAATCATTGGTGAGAATGAAGGCAATGATAGTTTGATCTTGAGTTTGAGGCCAATGCAGTATGGTCTTGCTTGGGAACGTTGTAGACAACTTCAAGCAGATAATGTTGTTGTCAAGGGTAAGGTTGTTGGTGCAAAAAAAGGAGGGGTGGTGGTTGAGGTTGAAGGCCTCAGAGGGTTTGTTCCATTTTCGCAGATATCAACGAAATCAACTGGAGAAGAGCTTCTTGAGAAGGAACTTCCTCTTAAGTTTGTAGAGGTTGATGAGAAACAGTCAACACTTGTCCTTAGTAACCGCAAGGCCGTGGCTGACAGCCAGCCACAGCTAGGAATTGGATCAGTAGTCATTGGCTCTGTTCAAAGCCTAAAGCCATATGGTGCCTTCATTGACATTGGTGGCATTAATGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTGTAACAGATATTGAAACTGTTCTTCAACCAGGTGATATACTAAAGGTGATGATTTTAAGTCATGATCAGGAGAGGGGCCGAGTAAGTCTTTCCACAAAGAAGCTAGAACCTACTCCTGGAGACATGATCCGTAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCGAAGTGGAAGCTATGGCCCGTGCTAATATGCTTAATTCCAGTAGTGGATTAACTGTCAGCAGTGATGGATCTTACTTGAGGAGGGTGGGACTGATCTGA 1179 0.4419 MSCVGQQLNLRCFFPSSSSSCCWWWSSNLTKKRVSFSIVNSVAISNAQTQERLKLKQLFREANQRCLNDPMDGVSFTLQDFTQALDHYHFHSQLGNKVIGTVFCTDDNGALVEIAAKSAAYLPLQEACIHRVNHVEEAGIVPGFRTEFLIIGENEGNDSLILSLRPMQYGLAWERCRQLQADNVVVKGKVVGAKKGGVVVEVEGLRGFVPFSQISTKSTGEELLEKELPLKFVEVDEKQSTLVLSNRKAVADSQPQLGIGSVVIGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDIETVLQPGDILKVMILSHDQERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAEVEAMARANMLNSSSGLTVSSDGSYLRRVGLI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1595 392 Gene3D - 178 255 IPR012340 -
Lal14g1595 392 Gene3D - 78 177 IPR012340 -
Lal14g1595 392 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Lal14g1595 392 Pfam S1 RNA binding domain 183 245 IPR003029 GO:0003676
Lal14g1595 392 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
Lal14g1595 392 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Lal14g1595 392 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Lal14g1595 392 SUPERFAMILY Nucleic acid-binding proteins 92 191 IPR012340 -
Lal14g1595 392 SMART S1_6 93 165 IPR022967 -
Lal14g1595 392 SMART S1_6 181 247 IPR022967 -
Lal14g1595 392 SMART S1_6 258 328 IPR022967 -
Lal14g1595 392 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 31 383 - -
Lal14g1595 392 CDD S1_RPS1_repeat_hs4 260 328 - -
Lal14g1595 392 Coils Coil 345 365 - -
Lal14g1595 392 Gene3D - 256 336 IPR012340 -
Lal14g1595 392 PANTHER 30S RIBOSOMAL PROTEIN S1 31 383 - -
Lal14g1595 392 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Lal14g1595 392 SUPERFAMILY Nucleic acid-binding proteins 182 251 IPR012340 -
Lal14g1595 392 PRINTS Ribosomal protein S1 signature 95 113 IPR035104 -
Lal14g1595 392 PRINTS Ribosomal protein S1 signature 113 127 IPR035104 -
Lal14g1595 392 PRINTS Ribosomal protein S1 signature 186 202 IPR035104 -
Lal14g1595 392 PRINTS Ribosomal protein S1 signature 231 251 IPR035104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1595 Lal-Chr14 16455955 16459398 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1595 K02945 - bvg:104889146 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1595 14 16455955 16459398 Lal14g1595 14 16455955 16459398 ECH
Lal14g1595 14 16455955 16459398 Lal3g0153 3 996146 999774 PCT
Lal14g1595 14 16455955 16459398 Lal11g0288 11 2038384 2042135 PCT
Lal3g0153 3 996146 999774 Lal14g1595 14 16455955 16459398 PCT
Lal11g0288 11 2038384 2042135 Lal14g1595 14 16455955 16459398 PCT