Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1974 ATGAGTATAAAGTTAAGTTTTTTGCTATGGGTTTGTATTTTGCTTTTGTGGGGTAATTGTTGTTTTGGAAGGTTTATGGTGGAGAAGAACAATTTGAAAGTGACTTCTCCAAAATCATTGAAGGGTGTGTATGAATGTGCAATTGGGAATTTTGGGATTCCTAAGTATGGAGGAACATTGATTGGTTCAGTAGTGTACCCAAAGGTGAATCAGAGAGGTTGCAAGAGCTTCAGTGATGTTGATACTTCTTTTCAGTCCAAGCCTGGAGGGTTCCCTACTTTCCTTCTTGTTGATCGTGGAGATTGCTACTTCACTTTGAAGGCATGGAACGCGCAGAACGGTGGAGCAGCAGCTATTCTTGTAGCTGATAACAAGGCAGAACAATTGATCACGATGGATACTCCTGAAGGTGGGAATGCTGTAAATGATGATTATGTTGAAAAGATTACCATTCCTTCTGCCCTTATAAGCAAATCTTTGGGAGATAGCATCAAGACAGCTCTCTCTAACGGCGAGATGGTTAACATAAATCTTGATTGGAGAGAGGCTCTTCCTCATCCAGATGATAGAGTTGAGTATGAGTTATGGACGAATAGTAACGACGAGTGCGGGGTAAAGTGTGACACTCAAATTAATTTTCTCAAGAGTTTTAAAGGGTCAGCTCAGTTACTTGAGAAACAAGGGTTCACTCAGTTTACCCCTCACTATATAACATGGTATTGCCCTGAAGCATTTCTCTTAACCAAACAGTGCAAGTCTCAGTGCATAAACCAGGGGAGGTACTGCGCGCCGGATCCTGAGCAAGATTTCAATAAAGGCTATGATGGAAAAGATGTTGTTATTCAAAACTTGCGTCAAGCTTGCTTCTTTAGAGTGGCGAATGAGAGTGGAAAGCCGTGGCAATGGTGGGACTATGTGACTGATTTTTCGATCCGTTGTCCGATGAAAGATAATAAGTACACTGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGTTGATCTGAAGAAGATCAAAGATTGTGTGGGTGATCCTCATGCAGATGTTGAAAACCCTGTTCTTAAGCTTGAACAGGACGCACAGATTGGCAAAGGCTCTCGAGGCGATGTTACTATTCTGCCTACTCTTGTTATAAATGAACGACAGTATAGAGGTAAGTTGACAAGAGCAGCAGTTCTCAAGGCAATCTGTGCAGGTTTCCAAGAGACTACTGAACCATCAATGTGCTTAACTACAGACATGGAAACAAACGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTGCTAACATTACTGCTTGCAGGGACACTTTCCGAGGACGAGTATGTGAGTGCCCTATAGTACAAAATGTGAAGTTTGTTGGTGATGGATATACTCACTGTGAAGCTTCGGGAGCTTTGAGGTGTGAAATGAACAATGGAGGTTGTTGGAAGGGAGCCCAAGGTGGCAAGGTCTACTCTGCTTGTATTGATGACCATACAAAAGGTTGTACCTGTCCACCAGGGTTCAGAGGTGATGGAATCAACTCCTGTGAAGATATTGATGAGTGCAAAGAGAAATCGGTATGCCAGTGCCCTGAATGCAGATGCAAAAACACCTGGGGGAGTTATGAGTGCAAATGTAGTAGTGGTTTGTTCTACATGCAAGAAAATGACATATGTATCGGTAGATATAGTGCTTCAGTGTCCAGTGGGAGTTTCATTTGGATGCTTATCCTCATATTGGCTGGTGCTGGTGCTGGTGTTTATGCATTTTACAAATACAGAATTCAGAGATATATGGATTCTGAGATAAGGACAATTATGGCCCAATACATGCCATTGGATAGTCAACCAGAAAACTATAATCATCAAGTTAATCATGATATCTAG 1884 0.4177 MSIKLSFLLWVCILLLWGNCCFGRFMVEKNNLKVTSPKSLKGVYECAIGNFGIPKYGGTLIGSVVYPKVNQRGCKSFSDVDTSFQSKPGGFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADNKAEQLITMDTPEGGNAVNDDYVEKITIPSALISKSLGDSIKTALSNGEMVNINLDWREALPHPDDRVEYELWTNSNDECGVKCDTQINFLKSFKGSAQLLEKQGFTQFTPHYITWYCPEAFLLTKQCKSQCINQGRYCAPDPEQDFNKGYDGKDVVIQNLRQACFFRVANESGKPWQWWDYVTDFSIRCPMKDNKYTEECSDQVIKSLGVDLKKIKDCVGDPHADVENPVLKLEQDAQIGKGSRGDVTILPTLVINERQYRGKLTRAAVLKAICAGFQETTEPSMCLTTDMETNECLENNGGCWQDKSANITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGALRCEMNNGGCWKGAQGGKVYSACIDDHTKGCTCPPGFRGDGINSCEDIDECKEKSVCQCPECRCKNTWGSYECKCSSGLFYMQENDICIGRYSASVSSGSFIWMLILILAGAGAGVYAFYKYRIQRYMDSEIRTIMAQYMPLDSQPENYNHQVNHDI 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1974 627 Gene3D - 22 187 - -
Lal2g1974 627 Gene3D Laminin 410 456 - -
Lal2g1974 627 SMART egfca_6 517 559 IPR001881 GO:0005509
Lal2g1974 627 Pfam PA domain 62 164 IPR003137 -
Lal2g1974 627 ProSitePatterns Calcium-binding EGF-like domain signature. 517 543 IPR018097 GO:0005509
Lal2g1974 627 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 11 606 - -
Lal2g1974 627 CDD PA_VSR 50 178 - -
Lal2g1974 627 Gene3D Laminin 471 555 - -
Lal2g1974 627 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 606 - -
Lal2g1974 627 SUPERFAMILY PA domain 94 171 IPR046450 -
Lal2g1974 627 CDD EGF_CA 517 548 - -
Lal2g1974 627 Pfam Complement Clr-like EGF-like 501 520 IPR026823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1974 Lal-Chr2 21913881 21920824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1974 5 618 Miscellaneous Gene Families AT3G52850 73.377 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1974 - - gmx:100807514 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1974 2 21913881 21920824 Lal2g1974 2 21913881 21920824 ECH
Lal2g1974 2 21913881 21920824 Lal14g0070 14 841204 852462 PCT
Lal14g0070 14 841204 852462 Lal2g1974 2 21913881 21920824 PCT