Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0887 ATGGCCATAGAGTGCATAAAAAGTATACAATCCATGCCTCAATTACCAAAGAACCAAGACCATAAAGAAGTTGATGAATCATCATTGGTTTTTGATGCATCACTTCTTAGGCACCAACTTCATCTCCCAAAACATTTCATTTGGCCTGATGAAGAGAAACCATGCTTAAAAAATGTACCTGAACTTGTTGTCCCACTCATTGACTTGGGAGGCTTCCTCTCCGGTGACTCGGGCGCCGCATTAGAAGCCGCCCGGCTCATCGGAGAGGCATGCCGAAAACATGGTTTCTTTCTTGTTGTTAATCATGGAATAGATTCTAAGTTAATATCCCATGCTCATAGCTACATGGATAACTTCTTTGAACTTCCCCTGTCTCAGAAACAGAGGGCTCAGAGGAAAACAGGGGAACACTGTGGTTATGCTAGTAGCTTCACTGGCAGGTTCACCTCTAAGCTTCCTTGGAAAGAAACCCTTTCTTTTCAGTTCTCAGCAGAGAAAAACTCACCCAAAATTGTTAAAGACTACTTGTGCAACACAATGGGCAAAGATTTCGAGCAATTCGGGAATGTTTACCAGGAATATTGTGAATCAATGAGTACTCTTTCTTTAGGGATAATGGAGCTTCTTGAAATTAGCCTTGGTGTTGGCAAAGCCTATTTTAGAGAGTTCTTTGAAGAAAACAGTTCTATAATGAGGCTCAATTACTATCCTCCTTGTCAAAAACCTGACCTTACTTTAGGCACTGGTCCTCATTGTGACCCAACATCTCTAACCATTCTTCACCAAGACCAAGTTGGTGGCTTGCAAGTTTGTGTTGACAATAAGTGGCACTCTATTAGTCCAAATTTCAATGCTTTTGTTGTTAATATTGGTGACACCTTCATGGCTCTTTCAAATGGAAGATACAAGAGTTGTTTGCATAGAGCAGTTGTGAACAGCAAAACAACAAGAAAATCTCTTGCTTTCTTTTTATGTCCAAGAAGTGAAAAGGTGGTAACTCCACCAAGTGAATTAGTTGATGATTTGAGTCCAAGGGTGTACCCAGATTTTACATGGCCAATGTTGCTTGAATTTACTCAGAAGCATTATAGAGCTGATACCAAAACCCTTGAGGCATTTACCAACTGGATTCAACAGAAAAGGAGCTGA 1149 0.4064 MAIECIKSIQSMPQLPKNQDHKEVDESSLVFDASLLRHQLHLPKHFIWPDEEKPCLKNVPELVVPLIDLGGFLSGDSGAALEAARLIGEACRKHGFFLVVNHGIDSKLISHAHSYMDNFFELPLSQKQRAQRKTGEHCGYASSFTGRFTSKLPWKETLSFQFSAEKNSPKIVKDYLCNTMGKDFEQFGNVYQEYCESMSTLSLGIMELLEISLGVGKAYFREFFEENSSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDQVGGLQVCVDNKWHSISPNFNAFVVNIGDTFMALSNGRYKSCLHRAVVNSKTTRKSLAFFLCPRSEKVVTPPSELVDDLSPRVYPDFTWPMLLEFTQKHYRADTKTLEAFTNWIQQKRS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0887 382 PRINTS Isopenicillin N synthase signature 87 104 - -
Lal2g0887 382 PRINTS Isopenicillin N synthase signature 251 272 - -
Lal2g0887 382 PRINTS Isopenicillin N synthase signature 286 312 - -
Lal2g0887 382 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 227 326 IPR005123 -
Lal2g0887 382 PANTHER ISOPENICILLIN N SYNTHASE-RELATED 19 379 - -
Lal2g0887 382 SUPERFAMILY Clavaminate synthase-like 38 366 - -
Lal2g0887 382 Pfam 2OG-Fe(II) oxygenase superfamily 229 326 IPR044861 -
Lal2g0887 382 Gene3D - 35 364 IPR027443 -
Lal2g0887 382 Pfam non-haem dioxygenase in morphine synthesis N-terminal 64 170 IPR026992 -
Lal2g0887 382 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 19 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0887 Lal-Chr2 5789307 5791194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0887 42 376 Glycosyltransferase AT5G59530 27.114 1.39e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0887 K05282 - gmx:100305378 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0887 2 5789307 5791194 Lal2g0887 2 5789307 5791194 ECH
Lal2g0887 2 5789307 5791194 Lal12g0023 12 206511 208572 PCT
Lal12g0023 12 206511 208572 Lal2g0887 2 5789307 5791194 PCT