Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0023 ATGACAATAGATTGCAAAACAAACATGCACTCTTTCAACATGCCTCAACAACCACCAAAGCAAGAAAACAAAGAAGAAGAAAAAGAACTACAACCATTGGTTTTTGATGCCTCAGTTCTTAGGCACCAACTTCATTTACCTAAGCAATTCATTTGGCCTGATGAAGAGAAAGCTTGTTTAGATCTTCCAGAACTCCAAGTCCCTCTCATTGACTTGGGAGGATTCCTCACTGGTGATCCACTTGCATCATTACAAGCTTCAAGGCTTGTTGGTGAGGCATGCCTAAAGCATGGTTTTTTTCTTGTTGTCAATCATGGGATTGATAATGAGTTAATATCTAATGCTCATCTTCACATGGATCAGTTTTTTGAGCTTCCCCTGTTTCAGAAACAGAGAGCTCAGAGGAAACTAGGTGAGCTCTGTGGTTATGCTAGTAGCTTCACTGGCAGATTCTCTTCTAAGCTTCCTTGGAAGGAAACACTTTCTTTTCAGTTTTCAGCTCACAGAAACTCACCCAACCTTGTCCAAGACTACTTATGCAACACAATGGGCAAAGATTTTGACCAATCTGGGAAGGTTTACCAGGACTACTGTGAAGCTATGAATACACTTTCTTTAGGTATAATGGAGCTTTTAGGAATGAGCCTTGGAGTTGGCAAAACTTGTTTTAGGGAATTCTTTGAGGAGAACAATTCAATAATGAGACTCAATTACTATCCTCCTTGTCAAAAACCTGAACTCACTTTAGGCACTGGTCCTCATTGTGATCCCACTTCTTTGACCATTCTGCACCAAGACCAAGTTGGTGGCCTCCAAGTTTTTGTTGACAATCAATGGCATTCTATTAGCCCAAATCTCAATGCTTTTGTGGTCAATATTGGTGATACCTTCATGGCTCTTTCAAATGGAAGATACAAGAGTTGCTTGCATAGGGCAGTGGTGAACAACAAGATAACAAGAAAATCTTTAGCTTTCTTTTTGTGTCCAAGAAGTGATAAGGTGGTGAGTCCACCATGTGAATTAGTGGACAATTTTAGTCCAAGGCTGTACCCAGATTTTACATGGCCTATGTTGCTTGAGTTTACTCAGAAACACTATAGAGCTGACATGAAAACCCTTGGGGCATTTACCAACTGGCTTCAACTGAAAACCACTTGA 1158 0.4041 MTIDCKTNMHSFNMPQQPPKQENKEEEKELQPLVFDASVLRHQLHLPKQFIWPDEEKACLDLPELQVPLIDLGGFLTGDPLASLQASRLVGEACLKHGFFLVVNHGIDNELISNAHLHMDQFFELPLFQKQRAQRKLGELCGYASSFTGRFSSKLPWKETLSFQFSAHRNSPNLVQDYLCNTMGKDFDQSGKVYQDYCEAMNTLSLGIMELLGMSLGVGKTCFREFFEENNSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVFVDNQWHSISPNLNAFVVNIGDTFMALSNGRYKSCLHRAVVNNKITRKSLAFFLCPRSDKVVSPPCELVDNFSPRLYPDFTWPMLLEFTQKHYRADMKTLGAFTNWLQLKTT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0023 385 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 22 382 - -
Lal12g0023 385 MobiDBLite consensus disorder prediction 1 19 - -
Lal12g0023 385 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 229 329 IPR005123 -
Lal12g0023 385 Pfam 2OG-Fe(II) oxygenase superfamily 231 329 IPR044861 -
Lal12g0023 385 Gene3D - 25 361 IPR027443 -
Lal12g0023 385 PRINTS Isopenicillin N synthase signature 90 107 - -
Lal12g0023 385 PRINTS Isopenicillin N synthase signature 254 275 - -
Lal12g0023 385 PRINTS Isopenicillin N synthase signature 289 315 - -
Lal12g0023 385 Pfam non-haem dioxygenase in morphine synthesis N-terminal 67 172 IPR026992 -
Lal12g0023 385 MobiDBLite consensus disorder prediction 1 27 - -
Lal12g0023 385 SUPERFAMILY Clavaminate synthase-like 40 369 - -
Lal12g0023 385 PANTHER ISOPENICILLIN N SYNTHASE-RELATED 22 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0023 Lal-Chr12 206511 208572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0023 44 379 Glycosyltransferase AT5G59530 26.531 3.55e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0023 K05282 - gmx:100816992 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0023 12 206511 208572 Lal12g0023 12 206511 208572 ECH
Lal2g0887 2 5789307 5791194 Lal12g0023 12 206511 208572 PCT
Lal12g0023 12 206511 208572 Lal2g0887 2 5789307 5791194 PCT