LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal2g0150	ATGGATGTTGAACTCAGCCAAGTGAACATGACTGAGGGAAAAGCACCTCAGAAAAATCTGGAGGATTTTAATCCTCAAAAGAAGCCAAAAAGGAACAAGTACGCTTTCGCTTGTGCATTATTGGCTTCCATGACTTCCATCTTACTTGGCTATGATATTGGTGTGATGAGTGGAGCAGCGCTGTACATAAAAACAGATCTGAAAATAACGGACGTGCAAATAGAAATATTGCTAGGAATCATAAACGTGTACTCACTGATAGGGTCTTGCCTGGCGGGAAGAACTTCTGATTGGATTGGTCGGCGTTACACGATTGTGGTAGCTGGTGTCATATTCTTTGCCGGATCAATACTAATGGGATTCTCTCCCAACTATTCCTTTCTCATGTTTGGCCGCTTTGTTGCTGGCATTGGTATTGGTTATGCTCTCATGATTGCTCCTGTCTACACTGCTGAGGTCTCTCCTGCTTCCTCTCGTGGCTTCCTCACTTCCTTCCCTGAGGTTTTCATCAATGGAGGGATATTGCTGGGATACATATCGAACTATGCATTTTCAAAGCTGTCACTTAAATTGGGTTGGCGGCTAATGCTTGGAATCGGTGTAGTTCCTTCAGTATTTCTAACCTTAGGAGTATTAGCTATGCCTGAATCACCACGATGGCTAGTAATGCGAGGTCGTTTAGGTGACGCAATAGTAGTCCTAAACAAAACCTCTGACTCCAAAGAAGAAGCTCAACTAAGACTAGCAGAAATCAAAGAAGCCGCAGGAATCCCTGAATCTTGCAACGACGACGTCGTTGAAGTACCTAAACAAAACTCTGGTGCTGGTGTTTGGAAAGACCTATTCCTTTCTCCTACACCCGTAATTCGTCATATTGTAATAGCTGCTCTCGGTATTCACTTCTTCCAACAAGCATCAGGCATAGACGCCGTCGTTTTATACAGTCCAAGAATCTTTGAAAAAGCTGGTATCAAAAACGACAACGATAAACTTCTCGCAACTGTAGCCGTTGGAATTATGAAAACAGGTTTTATCTTAGTTGCCACGTTTATGTTAGACAGAGTTGGTCGTCGTCCATTGTTGTTATCTAGTGTTGGTGGAATGGTAATCTCTCTTTTCACACTCGCTATCAGCCTCACGATCATTGACCATTCTGAACAGAAATTAATGTGGGCCATTGGATTGAGCATTGCTAGTGTTTTGTCATTCGTGGCAGCTTTCTCTATAGGTCTGGGACCCATTACGTGGGTCTATAGCACAGAGATATTTCCGTTGAGGTTGCGGGCACAGGGTTGTGCTATAGGGGTTGTGTTGAATAGGGTAACGAGTGGGGTAATTTCAATGACATTTCTGTCCCTATCTAAAGGGATAACAATTGGTGGAGCATTCTTTCTTTTTGGTGGGATTGCTACTGCTGCATGGCTATTCTTCTATTTCATGTTGCCAGAGACACAGGGTAAAACCCTTGAAGAAATGGAAGGAGCTTTTGGTAAATCTAAGCCTAAGTCTGGTACTTCACAATAG	1524	0.4318	MDVELSQVNMTEGKAPQKNLEDFNPQKKPKRNKYAFACALLASMTSILLGYDIGVMSGAALYIKTDLKITDVQIEILLGIINVYSLIGSCLAGRTSDWIGRRYTIVVAGVIFFAGSILMGFSPNYSFLMFGRFVAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNYAFSKLSLKLGWRLMLGIGVVPSVFLTLGVLAMPESPRWLVMRGRLGDAIVVLNKTSDSKEEAQLRLAEIKEAAGIPESCNDDVVEVPKQNSGAGVWKDLFLSPTPVIRHIVIAALGIHFFQQASGIDAVVLYSPRIFEKAGIKNDNDKLLATVAVGIMKTGFILVATFMLDRVGRRPLLLSSVGGMVISLFTLAISLTIIDHSEQKLMWAIGLSIASVLSFVAAFSIGLGPITWVYSTEIFPLRLRAQGCAIGVVLNRVTSGVISMTFLSLSKGITIGGAFFLFGGIATAAWLFFYFMLPETQGKTLEEMEGAFGKSKPKSGTSQ	507

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal2g0150	507	Coils	Coil	234	254	-	-
	Lal2g0150	507	PRINTS	Sugar transporter signature	46	56	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal2g0150	507	PRINTS	Sugar transporter signature	129	148	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal2g0150	507	PRINTS	Sugar transporter signature	303	313	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal2g0150	507	PRINTS	Sugar transporter signature	397	418	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal2g0150	507	PRINTS	Sugar transporter signature	420	432	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal2g0150	507	PANTHER	SUGAR TRANSPORTER	21	506	-	-
	Lal2g0150	507	SUPERFAMILY	MFS general substrate transporter	24	493	IPR036259	-
	Lal2g0150	507	ProSitePatterns	Sugar transport proteins signature 2.	134	159	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lal2g0150	507	TIGRFAM	SP: MFS transporter, sugar porter (SP) family	14	492	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal2g0150	507	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	38	485	IPR020846	GO:0022857
	Lal2g0150	507	Pfam	Sugar (and other) transporter	38	496	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Lal2g0150	507	PANTHER	SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER	21	506	IPR045262	GO:0015144
	Lal2g0150	507	CDD	MFS_PLT	41	492	IPR044776	GO:0005351
	Lal2g0150	507	ProSitePatterns	Sugar transport proteins signature 1.	92	109	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lal2g0150	507	Gene3D	MFS general substrate transporter like domains	28	500	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal2g0150	Lal-Chr2	904791	906490	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal2g0150	16	502	Organic Solute Cotransporters	AT3G18830	72.782	0.0	742

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal2g0150	-		-	lja:Lj3g3v3338420.1	813.913

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal2g0150	2	904791	906490	Lal2g0150	2	904791	906490	ECH
	Lal1g0237	1	1412161	1414707	Lal2g0150	2	904791	906490	ECH
	Lal1g0237	1	1412161	1414707	Lal2g0150	2	904791	906490	LSH