Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0237 ATGGATATTCAACTCAACCAAGTGAAGATGGGTGATGGAAAAGCAGTTGAAGCAAAAGCTGATGAGAAAATTGTTGAGGATTTTAATCCTCCAAAGAAGCCCAAAAAGAACAAGTATGCTTTCGCTTGTGCTATATTGGCTTCCATGACTTCCATCTTACTTGGCTATGATATTGGTGTGATGAGTGGAGCAGCCATATACATAAAAAGAGATCTGAAAGTCACGGACGTGCAAATTGAAATCCTTATGGGAATCATAAACCTCTACTCTCTAGTAGGCTCTTGCCTCGCCGGAAGAACCTCTGATTGGATTGGTCGCCGTTACACAATTGTCCTCGCCGGTGCCATTTTCTTCGCCGGAGCCATTCTCATGGGTTTCTCTCCAAACTATTCCTTTCTCATGTTCGGCCGTTTCATCGCCGGCATTGGCATCGGTTATGCCCTCATGATTGCCCCTGTCTACACCGCTGAGGTCTCCCCTGCTTCTTCCCGTGGTTTCCTTACCTCCTTCCCCGAGGTTTTCATCAACGGAGGGATATTACTGGGATACATATCAAACTTTGCATTTTCAAAATTAACACTTAAGTTAGGTTGGAGACTGATGCTTGGAATAGGTGCAGTTCCTTCAGTACTTCTAGCCGTTGGAGTATTAGCAATGCCCGAATCACCACGATGGCTTGTGATGCGAGGTCGTTTAGGTGATGCAATAATTGTTCTTAACAAAACCTCTGATTCTAAAGAAGAAGCTCAACTAAGACTAGCTGAAATTAAAGAAGCCGCAGGAATCCCTGAATCTTGCAACGACGACGTCGTTCAAGTACCAAAGCAAAACACGGGTGAGGGTGTTTGGAAACAACTTTTCATTTATCCTACACCAGCAATTCGTCATATTGTAATAGCTGCTCTAGGAATTCATTTCTTTCAACAAGCTTCAGGCGTAGACGCCGTCGTTTTATACAGTCCTAGAATATTTGAAAAAGCTGGAATCACAAACGACACTGATAAGCTTCTCGCAACCGTGGCCGTTGGATTTACAAAAACGATTTTCATCTTAGTAGCGACGTTTATGTTAGACCGAGTTGGGCGTCGACCATTGTTGTTAACAAGTGTTGGTGGAATTGTGTTGTCGCTTTTGACACTCGCTGTGAGCCTCACGATCATTGACAACTCAGAGAAGAAGTTGATATGGGCCGTTGGATTGAGTATTGCGATGGTTTTGTCATCCGTGGCAACATTTTCAATAGGAGCGGGACCCATAACGTGGGTGTATAGTACAGAAATATTTCCGTTGAGGTTGCGAGCACAAGGGTGTGCAATGGGGGTAGTGGTGAATAGGGTAACGAGTGGAGTAATATCAATGACTTTTCTGTCCTTATCTAAAGGGATAACAATTGGTGGAGCATTCTTTCTTTATGGAGGGATTGCTATTGCTGGATGGATATTCTTCTATTTCATGTTGCCTGAGACACGAGGTAAAACACTTGAAGAGATGGAAGGATCTTTTGGTAAATTTAAGGTTAAGTCTAACAACAATAAGGAACGTAGGTAA 1548 0.4322 MDIQLNQVKMGDGKAVEAKADEKIVEDFNPPKKPKKNKYAFACAILASMTSILLGYDIGVMSGAAIYIKRDLKVTDVQIEILMGIINLYSLVGSCLAGRTSDWIGRRYTIVLAGAIFFAGAILMGFSPNYSFLMFGRFIAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNFAFSKLTLKLGWRLMLGIGAVPSVLLAVGVLAMPESPRWLVMRGRLGDAIIVLNKTSDSKEEAQLRLAEIKEAAGIPESCNDDVVQVPKQNTGEGVWKQLFIYPTPAIRHIVIAALGIHFFQQASGVDAVVLYSPRIFEKAGITNDTDKLLATVAVGFTKTIFILVATFMLDRVGRRPLLLTSVGGIVLSLLTLAVSLTIIDNSEKKLIWAVGLSIAMVLSSVATFSIGAGPITWVYSTEIFPLRLRAQGCAMGVVVNRVTSGVISMTFLSLSKGITIGGAFFLYGGIAIAGWIFFYFMLPETRGKTLEEMEGSFGKFKVKSNNNKERR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0237 515 ProSitePatterns Sugar transport proteins signature 1. 97 114 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal1g0237 515 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 24 513 IPR045262 GO:0015144
Lal1g0237 515 ProSitePatterns Sugar transport proteins signature 2. 139 164 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal1g0237 515 CDD MFS_PLT 46 497 IPR044776 GO:0005351
Lal1g0237 515 PANTHER SUGAR TRANSPORTER 24 513 - -
Lal1g0237 515 Coils Coil 239 259 - -
Lal1g0237 515 Gene3D MFS general substrate transporter like domains 33 504 IPR036259 -
Lal1g0237 515 SUPERFAMILY MFS general substrate transporter 29 498 IPR036259 -
Lal1g0237 515 PRINTS Sugar transporter signature 51 61 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal1g0237 515 PRINTS Sugar transporter signature 134 153 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal1g0237 515 PRINTS Sugar transporter signature 308 318 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal1g0237 515 PRINTS Sugar transporter signature 402 423 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal1g0237 515 PRINTS Sugar transporter signature 425 437 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal1g0237 515 ProSiteProfiles Major facilitator superfamily (MFS) profile. 43 490 IPR020846 GO:0022857
Lal1g0237 515 TIGRFAM SP: MFS transporter, sugar porter (SP) family 16 497 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal1g0237 515 Pfam Sugar (and other) transporter 43 499 IPR005828 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0237 Lal-Chr1 1412161 1414707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0237 22 514 Organic Solute Cotransporters AT3G18830 73.887 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0237 - - lja:Lj3g3v3338420.1 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0237 1 1412161 1414707 Lal1g0237 1 1412161 1414707 ECH
Lal1g0237 1 1412161 1414707 Lal2g0150 2 904791 906490 ECH
Lal1g0237 1 1412161 1414707 Lal2g0150 2 904791 906490 LSH