Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0042 ATGACGACGTCGTTTGGAGGAGGTGGTAGGTCAGCAGTGGGTGTGGTGAATGAGGTTCATATTCCCAAGTTCCATGGCGTTCTCAATCTCTCATGCAATGCCATTTCTCTTCCCTCAACCACTCGCTCTCTCTCCCTCATACGCGCCCTCTCCACTTTGGAGGTTTCGGCCTCAGATTTATTGCCCCGTTCGATTCTACCTGCAACTGTGACTGAGAAGCGCAGCAAAGTTGAAATATTCAAAGAGCAAAGTAATTTCATAAGGTATCCTCTTAATGAGGAGTTGTTGACGGATGCCCCTAATATAAATGAACCTGCTACACAATTGATCAAGTTTCATGGTAGCTATCAACAGTACAATAGGGATGAGCGTGGTTCAAGAACCTACTCGTTTATGCTACGTACGAAGAATCCTTGCGGGAAGGTTCCAAACCAACTTTACTTGACCATGGATGATCTTGCTGACCAGTTTGGAATTGGAACACTTCGTTTGACCACCCGACAAACATTTCAACTTCATGGTGTCCCCAAGAAGGACCTTAAAACTGTAATGAGTACCATCATTCAGAATATGGGCTCAACTCTTGGTGCATGTGGTGATCTTAACAGAAATGTACTTGCTCCTGCTGCTCCATTTGTGAGAAAAGATTACCTCTTTGCCCAAAAAACTGCAGAAAACATTGCTGCGCTGCTGACTCCTCAATCTGGTTTCTACTATGATATTTGGGTAGATGGGGAAAGGGTTTTGACATCAGAGCCCCCTGAAGTAATAAAGGCTCGAAATGACAATTCTCACGGTACAAACTTTACAGATTCACCGGAGCCTATCTATGGAACTCAATTCCTGCCAAGGAAATTCAAAATTGCAGTTACCGTGCCAACTGATAACTCAGTGGATCTTCTCACAAATGATATTGGTGTTGTCGTTGTTACTGATGATGCTGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGAATGGGAAGAACACATAGGTTGGAGGCCACTTTCCCTCGATTGGCTGAACCACTGGGTTATGTACCAAAAGAGGATATTTTATATGCAGTGAAAGCAATTGTTGTTACACAGCGAGAAAATGGTAGAAGAGATGACCGCAAGTACAGTAGAATGAAATATTTGATCAGCTCTTGGGGAGTTGAAAAGTTCAGAAGTGTAGTGGAAGAATACTATGGCAAGAAATTTGAACCTTTACGTGAATTGCCTGAGTGGGAATTTAAAAGTCATCTTGGGTGGCATCAACAGGGTGATGGCAGTTTATTCTGTGGGCTTCATGTTGATAATGGTCGTATTGGTGGAAAAATGAAAAAGACATTGAGGGAGGTTATTGAGAAGTATAATTTGAATGTTCGTATCACTCCAAATCAGAACATCATCTTGACTGATATCCGTGCTTCATGGAAGCGTCCCATCACAACTGCTCTTGCTCAAGCTGGCCTGCTGGAACCTAGGTTTGTAGATCCCCTCAATATAACAGCAATGGCTTGCCCTGCTTTCCCCCTATGCCCACTGGCAATTACTGAAGCTGAACGTGGAATACCAGACATTCTTAAGCGGATTCGTGCTGTCTTTGAGAAGATCGGTCTGAAGTATAATGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCCGAGCTTGGACTGGTTGGCGATGGTCCAAACAGCTACCAGATTTGGCTTGGAGGTAACAAAAACCAAACCTCATTAGCTCAAAGTTTCATGGACAAGGTGAAGATTCTAGACCTTGAAAAGGTTTTGGAGCCATTGTTTTATCACTGGAAGCAAAAGCGTCAGTCTAAAGAATCATTTGGTGACTTCACAACCCGCATTGGATTTGAGAAGCTGAAGCAATATATTGAGAAATGGGAGGGTCCAGTAGCACCAGCACCAGCACGGCACAACCTGAGGCTCTTTGCGGACAAAGAGACATATGAAGCAATAGATGAATTAGCTAAGCTTCAAAACAAGAGTGCTCATCAGTTGGCCATGGAAGTCATCCGCAATTTTGTGGGGTCTTCCCAAAATGGGAAAAGTGAATGA 2085 0.4384 MTTSFGGGGRSAVGVVNEVHIPKFHGVLNLSCNAISLPSTTRSLSLIRALSTLEVSASDLLPRSILPATVTEKRSKVEIFKEQSNFIRYPLNEELLTDAPNINEPATQLIKFHGSYQQYNRDERGSRTYSFMLRTKNPCGKVPNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVPKKDLKTVMSTIIQNMGSTLGACGDLNRNVLAPAAPFVRKDYLFAQKTAENIAALLTPQSGFYYDIWVDGERVLTSEPPEVIKARNDNSHGTNFTDSPEPIYGTQFLPRKFKIAVTVPTDNSVDLLTNDIGVVVVTDDAGEPQGFNIYVGGGMGRTHRLEATFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGVEKFRSVVEEYYGKKFEPLRELPEWEFKSHLGWHQQGDGSLFCGLHVDNGRIGGKMKKTLREVIEKYNLNVRITPNQNIILTDIRASWKRPITTALAQAGLLEPRFVDPLNITAMACPAFPLCPLAITEAERGIPDILKRIRAVFEKIGLKYNESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNKNQTSLAQSFMDKVKILDLEKVLEPLFYHWKQKRQSKESFGDFTTRIGFEKLKQYIEKWEGPVAPAPARHNLRLFADKETYEAIDELAKLQNKSAHQLAMEVIRNFVGSSQNGKSE 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0042 694 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 496 645 IPR045854 -
Lal2g0042 694 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 71 198 IPR036136 GO:0016491
Lal2g0042 694 PRINTS Sirohaem Fe-binding site signature 498 516 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lal2g0042 694 PRINTS Sirohaem Fe-binding site signature 547 565 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lal2g0042 694 PANTHER BNAA01G31570D PROTEIN 30 639 - -
Lal2g0042 694 Gene3D Sulfite Reductase Hemoprotein, domain 1 198 405 IPR045854 -
Lal2g0042 694 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 30 639 IPR045169 GO:0016491|GO:0020037|GO:0051536
Lal2g0042 694 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 547 563 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lal2g0042 694 Pfam Nitrite and sulphite reductase 4Fe-4S domain 497 636 IPR006067 GO:0016491|GO:0020037|GO:0051536
Lal2g0042 694 Pfam Nitrite and sulphite reductase 4Fe-4S domain 224 402 IPR006067 GO:0016491|GO:0020037|GO:0051536
Lal2g0042 694 TIGRFAM sir: sulfite reductase, ferredoxin dependent 67 637 IPR011787 GO:0020037|GO:0050311|GO:0051539
Lal2g0042 694 Gene3D Sulfite Reductase Hemoprotein;Domain 2 406 490 - -
Lal2g0042 694 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 417 489 IPR036136 GO:0016491
Lal2g0042 694 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 199 414 IPR045854 -
Lal2g0042 694 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 128 186 IPR005117 GO:0016491
Lal2g0042 694 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 420 482 IPR005117 GO:0016491
Lal2g0042 694 Gene3D Sulfite Reductase Hemoprotein, domain 1 494 641 IPR045854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0042 Lal-Chr2 253808 258481 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0042 K00392 - gmx:547693 1194.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0083 1 585014 591987 Lal2g0042 2 253808 258481 LSH