Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0083 ATGACGACGTCGTTTGGAGGCTCTGTTTCCTTCCTCAATGACCCTAAGGTTCAGATTCCCACTTTTCACGGCTTCAAGTCTGCTTCTCCATCTGCTTCACCTCTCACTCTCTCACGCAATGCCCTTTCTCTCCCTTCACCCACGCGCCCCCTCTCCCTCATACGCGCCGTCTCCACTCCTGCAAAGCCTCACACTGCGACTGAGAAGCGCAGCAAAGTCGAAATATTCAAAGAACAAAGTAATTTCATTAGGTATCCTCTTAATGAGGAGTTGTTGACGGATGCCCCTAATATAAATGAACCTGCCACACAATTGATCAAGTTTCATGGTAGCTATCAACAATACAATAGAGATGAGCGTGGTTCAAGAACCTACTCGTTTATGCTACGTACAAAGAATCCTTGCGGGAAGGTTCCAAACCGACTTTACTTGACCATGGATGATCTTGCTGACCAGTTTGGAATTGGAACACTTCGTTTGACCACCAGACAAACATTTCAACTTCATGGTGTCCCCAAGAAGGACCTTAAGACAGTAATGAGTACCATTATTCAGAATATGGGCTCAACACTTGGTGCATGTGGTGATCTAAATAGAAATGTACTTGCTCCTGCTGCTCCGTTTGTGAGAAAAGATTACCTCTTTGCTCAACAAACTGCGGATAACATCGCTGCACTGCTGACTCCTCAGTCTGGTTTCTACTATGATATCTGGGTAGATGGGGAAAGGGTTTTGTCATCAGAGCCTCCTGAAGTAGTACAGGCACGAAATGACAATTCTCACGGTACGAATTTTACAGATTCACCTGAGCCCATCTATGGAACCCAGTTCTTGCCAAGGAAGTTCAAAATTGCAGTTACCGTGCCAACTGATAACTCAGTGGACCTTCTCACAAATGATATTGGTGTTGTCGTAGTTACTGATGAAGCTGGGGAGCCTCAAGGGTTCAACATATATGTTGGTGGTGGAATGGGAAGAACACATAGGTTGGAGACCACTTTTCCCCGTTTGGCTGAACCATTAGGTTATGTACCAAAAGAGGATATTTTGTATGCAGTGAAAGCAATTGTTGTTACACAACGAGAAAATGGGAGAAGAGATGACCGCAAGTATAGTAGAATGAAATATTTAATCAGCTCTTGGGGCATAGAGAAATTCAGAAGTGTAGTGGAGCAATATTATGGCAAGAAATTTGAACCTTTTCGTGAATTGCCAGAGTGGGAATTTAAAAGTCATCTTGGGTGGCATCAACAGGGCGATGGCAGTTTATTTTGTGGGCTTCATGTTGATAGTGGTCGTATTGGTGGGAAAATGAAAAAGACGTTGAGGGAGGTTATTGAGAAGTATAATTTGAATGTTCGGATCACTCCAAATCAGAACATCATCTTGACTGACATCCGTGCTTCATGGAAGCGTCCCATCACAACTGCTCTTGCTCAAGCTGGTCTGCTGCAACCTAGATTTGTCGACCCCCTCAATATAACGGCAATGGCCTGCCCTGCATTCCCCCTATGCCCACTGGCAATTACTGAAGCTGAACGCGGGATACCAGACATTCTTAAGCGGATTCGTGCTGTCTTTGAGAAGGTTGGTCTGAAGTATAACGAGTCCGTGGTTGTAAGGATCACCGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCCGAACTTGGATTGGTTGGTGATGGTCCGAACAGCTACCAGATTTGGCTTGGAGGTAACAAGAATCAAACTTCATTAGCTCAAAGTTTCCTTGACAAGGTGAAGATTCTAGACCTTGAAAAGGTTTTGGAGCCATTGTTTTATCACTGGAAGCAAAAGCGTCACTCTAAAGAATCATTTGGTGACTTCACAACCCGCATTGGATTTGAGAAGCTTAAGGAATATATTGAAAAATGGGATGGTCCAGTAGCACCAGCACGCCACAATCTCAGGCTCTTTGCTGACAAAAAGACATATGAAGCAATAGAAAAATTAGCAAAGCTTCAAAACAAGAGTGCTCATCAGTTGGCTATGGATGTTATCCGCAATTTTGTGGCTGCCAGCCAAAATGGAAAAAGTGAATGA 2067 0.4417 MTTSFGGSVSFLNDPKVQIPTFHGFKSASPSASPLTLSRNALSLPSPTRPLSLIRAVSTPAKPHTATEKRSKVEIFKEQSNFIRYPLNEELLTDAPNINEPATQLIKFHGSYQQYNRDERGSRTYSFMLRTKNPCGKVPNRLYLTMDDLADQFGIGTLRLTTRQTFQLHGVPKKDLKTVMSTIIQNMGSTLGACGDLNRNVLAPAAPFVRKDYLFAQQTADNIAALLTPQSGFYYDIWVDGERVLSSEPPEVVQARNDNSHGTNFTDSPEPIYGTQFLPRKFKIAVTVPTDNSVDLLTNDIGVVVVTDEAGEPQGFNIYVGGGMGRTHRLETTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSHLGWHQQGDGSLFCGLHVDSGRIGGKMKKTLREVIEKYNLNVRITPNQNIILTDIRASWKRPITTALAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVVRITGCPNGCARPYMAELGLVGDGPNSYQIWLGGNKNQTSLAQSFLDKVKILDLEKVLEPLFYHWKQKRHSKESFGDFTTRIGFEKLKEYIEKWDGPVAPARHNLRLFADKKTYEAIEKLAKLQNKSAHQLAMDVIRNFVAASQNGKSE 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0083 688 TIGRFAM sir: sulfite reductase, ferredoxin dependent 61 633 IPR011787 GO:0020037|GO:0050311|GO:0051539
Lal1g0083 688 PANTHER BNAA01G31570D PROTEIN 41 635 - -
Lal1g0083 688 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 543 559 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lal1g0083 688 PRINTS Sirohaem Fe-binding site signature 494 512 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lal1g0083 688 PRINTS Sirohaem Fe-binding site signature 543 561 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lal1g0083 688 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 67 194 IPR036136 GO:0016491
Lal1g0083 688 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 124 182 IPR005117 GO:0016491
Lal1g0083 688 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 416 478 IPR005117 GO:0016491
Lal1g0083 688 Pfam Nitrite and sulphite reductase 4Fe-4S domain 220 398 IPR006067 GO:0016491|GO:0020037|GO:0051536
Lal1g0083 688 Pfam Nitrite and sulphite reductase 4Fe-4S domain 493 632 IPR006067 GO:0016491|GO:0020037|GO:0051536
Lal1g0083 688 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 492 639 IPR045854 -
Lal1g0083 688 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 413 485 IPR036136 GO:0016491
Lal1g0083 688 Gene3D Sulfite Reductase Hemoprotein, domain 1 490 637 IPR045854 -
Lal1g0083 688 Gene3D Sulfite Reductase Hemoprotein, domain 1 194 401 IPR045854 -
Lal1g0083 688 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 195 410 IPR045854 -
Lal1g0083 688 Gene3D Sulfite Reductase Hemoprotein;Domain 2 402 486 - -
Lal1g0083 688 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 41 635 IPR045169 GO:0016491|GO:0020037|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0083 Lal-Chr1 585014 591987 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0083 K00392 - gmx:547693 1211.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0083 1 585014 591987 Lal2g0042 2 253808 258481 LSH