Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1181 ATGGCAACCTCATCCATCTCCACCAACTTTCTCTCCACAATCTTACCCACAAAACCACCATCTCAATTCAACCTTTCACCTTCATTCATTTCCATTACATCTCATAAACACAACAACAACAACAACATAGTACAACCACTTGTTGTTTCTAAACATGACCGAGACTCTTCTGATTTATCATCAGTCATTTATCCGTCTCTCGGACACGTAAACACGCTCTACTACCAGTCTGGATATAATGTCCAGGTGGTAGTAGACGATAACGAGTCCGAAGAGAGGCTTCTTAATAGGTTCAGAAGAGAAGTTATGAAAGCTGGTGTAATTCAAGAGACTAAGAGAAGAAGATACTTTGAAAACAAGCAGGAAGAGAAGAAGCGCAAGCACCGTGAGGCTGCTAAGCGTAACAGCAGAGCTAGGCGCTTCTCTCGGTTTAGACCTCCGATGCAAAACAAGCCGGATATCCCAGAAGCCAAGAAGGTAGAGGATGATGATAACTGGGATATACCTGAAGGAACACTTTGA 522 0.4291 MATSSISTNFLSTILPTKPPSQFNLSPSFISITSHKHNNNNNIVQPLVVSKHDRDSSDLSSVIYPSLGHVNTLYYQSGYNVQVVVDDNESEERLLNRFRREVMKAGVIQETKRRRYFENKQEEKKRKHREAAKRNSRARRFSRFRPPMQNKPDIPEAKKVEDDDNWDIPEGTL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1181 173 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 17 171 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lal25g1181 173 TIGRFAM S21p: ribosomal protein bS21 81 137 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lal25g1181 173 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 17 171 - -
Lal25g1181 173 PRINTS Ribosomal protein S21 family signature 84 92 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lal25g1181 173 PRINTS Ribosomal protein S21 family signature 92 101 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lal25g1181 173 PRINTS Ribosomal protein S21 family signature 104 114 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lal25g1181 173 PRINTS Ribosomal protein S21 family signature 116 126 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lal25g1181 173 Hamap 30S ribosomal protein S21 [rpsU]. 80 136 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lal25g1181 173 MobiDBLite consensus disorder prediction 152 166 - -
Lal25g1181 173 Pfam Ribosomal protein S21 82 135 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lal25g1181 173 MobiDBLite consensus disorder prediction 118 173 - -
Lal25g1181 173 Gene3D Ribosomal protein S8 95 133 IPR038380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1181 Lal-Chr25 15329270 15331641 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1181 - - zju:107427921 161.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1181 25 15329270 15331641 Lal25g1181 25 15329270 15331641 ECH
Lal25g1181 25 15329270 15331641 Lal13g1652 13 16321768 16322151 PCT
Lal13g1652 13 16321768 16322151 Lal25g1181 25 15329270 15331641 PCT