Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0629 ATGATGAAGATCTTTGCAGCACTAAACTTACTTGGGTTATTTTTTTCTTTGTTAAACAGAATTGAATCATTTCATCATAGCATGAGTTCTATCAATATGGTAAATCAAAATCAGCCTTATAGAACTTCCTATCATTTTCAGCCCCAACAAAATTGGATGAATGGACCAATGTACTATAAAGGTGTTTACCACCTATTCTACCAACATAATCCTGAGGCAGCAACCTTTGGAGATAGAATGGTATGGGGTCATTCTGTGTCATATGATCTAATCAATTGGATTCATCTGAATCATGCAATTGAACCAAGTGAGCCTTATGACATCAATAGTTGTTGGTCCGGCTCGGCCACGATACTCGAAGGCGAAAAGCCTGCTATTTTGTATACAGGTATTGATGAGAACAAGCATCAAGTTCAGAACTTGGCTTTGCCAAAGGATCTATCAGATCCATTTTTAAGAGAATGGGTCAAACACCCTCAAAACCCTGTCATGACTCCACCTAGTGGAGTTGAAGTGGATAACTTTAGAGACCCTTCAACTGCTTGGAAGGGAGGGGATAGAAAATGGAGGGTAGTCATTGGTGCTCAAAATGGTGATGAAGGGAAAGTAATTCTCTACCAAAGTGATGATTTTGTTAACTGGACAGTCGATCCGAATCCTTTTTATGCATCGGATAATACCCGAGTTTGCGAATGCCCCGACTTTTTTCCGGTGTCCATAAATAGCACCAATGGGTTGGATACTTCTATCCAAAATGCAAGTGTTAGGCATGTCTTGAAGATAAGTTATCTAACCAGACAACATGACTACTATTTTCTTGGCAAATATGTTTCTGATCAGGAAAACTTTATTCCTGATACTAAGTTCACAGGAACTAGTTCAGATTTGAGATTTGATTATGGCAAGTTTTATGCTTCCAAGTCATTTTTTGACTATGCCAAGAACAGGAGGATATTATGGGGTTGGGTGAATGAATCTGACACTTCACAAGATGATATTCATAAAGGATGGGCTGGCCTACAGTCGATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGCGATTGATCCAATGGCCAATTGAAGAGGTAGAAAAACTACGCGACAAGCAAATCACTATCACAGGAGAGAAACTCACAACTGGATCAACTCTTGAAGTTTCAGGTATCACTGCATCACAGGTTGATGTAGATGTGCTGTTTGAGATACCTGAACTAGAAAGTGCAGAGTGGTTAGATCCAAGTGGAGTTGATCCTGAACTACTATGTAGCCAAGGAGATGCATCAATAAGTGGAACAATAGGACCTTTTGGTTTGTTAGCTTTGGCTTCAAAGGATCTAACAGAACAAACTGCAGTGTACTTCAGAATATACAAAGCTCTTAACAAATATATAGGCCTCATGTGCAGTGACCAGAGCAGATCTTCATTGAGGCAGGACCTTGATAAAACCACATATGGAACATTCTTTGACATAGATCCCAATGTGAAAACAATTTCACTTAGAATCTTGATTGACCACTCCATTATTGAGAGTTTTGGAGAGGAAGGAAAAGTTTGTATTACGAGTAGAGTTTATCCCTCCTTAGCTATAGACAAAGAGGCTAACCTTTATGTATTTAATAATGGAATTAAGAATGTGGTGATCTCAAAATTGAATGCTTGGAGCATGAAGCAAGCACTGCTTGGAAATGAGGGACATAATAGTTCTGCCTGA 1716 0.3916 MMKIFAALNLLGLFFSLLNRIESFHHSMSSINMVNQNQPYRTSYHFQPQQNWMNGPMYYKGVYHLFYQHNPEAATFGDRMVWGHSVSYDLINWIHLNHAIEPSEPYDINSCWSGSATILEGEKPAILYTGIDENKHQVQNLALPKDLSDPFLREWVKHPQNPVMTPPSGVEVDNFRDPSTAWKGGDRKWRVVIGAQNGDEGKVILYQSDDFVNWTVDPNPFYASDNTRVCECPDFFPVSINSTNGLDTSIQNASVRHVLKISYLTRQHDYYFLGKYVSDQENFIPDTKFTGTSSDLRFDYGKFYASKSFFDYAKNRRILWGWVNESDTSQDDIHKGWAGLQSIPRQVWLDKSGKRLIQWPIEEVEKLRDKQITITGEKLTTGSTLEVSGITASQVDVDVLFEIPELESAEWLDPSGVDPELLCSQGDASISGTIGPFGLLALASKDLTEQTAVYFRIYKALNKYIGLMCSDQSRSSLRQDLDKTTYGTFFDIDPNVKTISLRILIDHSIIESFGEEGKVCITSRVYPSLAIDKEANLYVFNNGIKNVVISKLNAWSMKQALLGNEGHNSSA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0629 571 Gene3D Glycosyl hydrolase domain; family 43 49 373 IPR023296 -
Lal25g0629 571 CDD GH32_Fruct1-like 51 349 - -
Lal25g0629 571 Gene3D - 374 557 - -
Lal25g0629 571 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 33 563 - -
Lal25g0629 571 Pfam Glycosyl hydrolases family 32 C terminal 363 556 IPR013189 -
Lal25g0629 571 Pfam Glycosyl hydrolases family 32 N-terminal domain 45 360 IPR013148 -
Lal25g0629 571 SUPERFAMILY Arabinanase/levansucrase/invertase 35 361 IPR023296 -
Lal25g0629 571 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 33 563 - -
Lal25g0629 571 SUPERFAMILY Concanavalin A-like lectins/glucanases 360 560 IPR013320 -
Lal25g0629 571 SMART glyco_32 45 517 IPR001362 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0629 Lal-Chr25 4842437 4846257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0629 54 565 Glycoside Hydrolase AT1G55120 55.556 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0629 K01193 - gmx:100777487 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0629 25 4842437 4846257 Lal25g0629 25 4842437 4846257 ECH
Lal8g0838 8 6086800 6091969 Lal25g0629 25 4842437 4846257 LSH