Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0627 ATGGCTTGGAGACCCTTAATAACACAGATTGCTAGGCGTCAATCAGAGTTTGGACTGGTCAAAAGTTTGTTTATTAGAAGCTACTTTTCTGTTAATCAGTTTGGAGATCGTGTAGGGAATAGGCTTTTATGTGCACAAGCGAGATTCCAGTCAAGCTACATTAGCAATTTATCTCGTCGAGTAAGAGATGCAGATGAAGCCAGTGATGTTGCTCATCTTAAAGAACTATACTATCGCAATGATCCTGAAGCTGTGATTAAATTATTTGAAAGTCAGCCATCTCTACGCACTAATCCTTCAGCCCTTTCTGAATATGTTAAAGCGTTAGTCAAAGTTGATAGGCTGGATGAAAGTGAATTACTGAAGACATTGCAGAAAGGTGTTTCCAATTCCCTGAGGGAAGACCAAAATATAGGTGGCCTTTCTGCTTTTAGAAATGTGGGAAATTCTACAAATGACATAGCTCTTGGTAGTGCAAGTTCTCCAATTCATATGGTGACTACAGAAGTTGGAAGTTTTAAAGATCGGTTATGGCGTACATTTAGGTCCCTTGCCGTGACCTTTTTATTGATTTCTGGTGTAGGAGCAATTATTGAGGATAAAGGGATCAGTAAAGGACTTGGTATGAATGAAGGCGTGCAACCCATCTTGGAGACAAGTACAAAGTTTAGTGATGTAAAAGGTGTGGATGAGGCAAAGGCTGAGCTGGAAGAAATTGTTCACTACCTCCGAGACCCGAAGCGCTTTACTCGTCTTGGTGGTAAGCTCCCAAAAGGAGTTTTGCTTGTTGGTCCACCTGGCACTGGAAAAACAATGTTAGCCAGAGCTATAGCCGGAGAGGCTGGGGTTCCTTTCTTCTCATGCAGCGGTAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCACGAAGGGTGAGAGATCTTTTTTCTGCTGCAAAAAAGCGATCACCTTCTATTATCTTTATTGATGAGATAGATGCTATTGGAGGACGCCGAAATCCAAAAGACCAAATGTACATGAAGATGACATTAAATCAGTTGCTCGTTGAGCTAGATGGATTCAAACAAAATGAAGGCATAATTGTAATTGCAGCTACTAATTTTCCTGAGTCATTGGATAAGGCTTTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGTTGTTCCCAATCCAGATGTAGAAGGAAGACGGCAGATTTTGGAATCATACATGTCAAAGGTTCTGAAGGGTGTCGATGTTGATCTAATGATCATTGCCCGGGGAACACCTGGATTCTCTGGTGCTGACCTTGCAAACTTGATTAACGTTGCTGCTCTCAAGGCTGCAATTGATGGTGGCAAAACTGTGAGCATGGCTGATTTAGAACATGCAAAGGACAAGATCTTAATGGGAAGCGAACGCAAGTCAGCGGTCATTTCCGAAGAGTCACGAAAGTTGACTGCTTTTCATGAGGGTGGCCATGCCCTTGTGGCCATTCATACTGATGGGGCCCTTCCTGTTCACAAGGCAACAATAGTCCCCCGTGGGATGGCTCTTGGCATGGTTACTCAATTGCCTGACAAGGATGAGACCAGTATGTCGCGTAAACAGATGCTTGCCCGGCTCGATGTTTGCATGGGAGGCCGGGTTGCTGAAGAGCTAATTTTTGGAGAAAATGAGGTCACTTCCGGTGCATCATCGGATCTTAAGCAGGCAACTAGTCTAGCAAGGGAAATGGTTACTAAATATGGTATGGGCAATGAAGTTGGACTTGCCACTCACAATTACAATGATGATGGGAGAAGCTTGAGTTCAGAAACTAGGCTTCTTATTGAGAAAGAGGTGAAGCACTTCCTAGAGAGGGCTTACCACAATGCGAAAACTATTCTAACCACTCACAATAAGGAGCTTCATGCACTTGCAAATGCTCTTTTGGAGCATGAGACTCTTACAGGAAATCAGATAAAGACATTGCTTGCCCAAGTTAAGTCTCAGAAGCAGCAGCAGTCACATATAGTTGAACCACAGAGCAGTTCACAATCCAATACAGCGCCTCCACCATCAAACCCAGCGGCATCTGCTGCTGCAGCCGCAGCTGCCGCAGCAGCTGCCGCTACTGCTGCTGCCAAGGGTGCTGCTGCAAAGGCTCAAGGTGTTCAAGTGGGATCTTAG 2151 0.4449 MAWRPLITQIARRQSEFGLVKSLFIRSYFSVNQFGDRVGNRLLCAQARFQSSYISNLSRRVRDADEASDVAHLKELYYRNDPEAVIKLFESQPSLRTNPSALSEYVKALVKVDRLDESELLKTLQKGVSNSLREDQNIGGLSAFRNVGNSTNDIALGSASSPIHMVTTEVGSFKDRLWRTFRSLAVTFLLISGVGAIIEDKGISKGLGMNEGVQPILETSTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMYVGVGARRVRDLFSAAKKRSPSIIFIDEIDAIGGRRNPKDQMYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILESYMSKVLKGVDVDLMIIARGTPGFSGADLANLINVAALKAAIDGGKTVSMADLEHAKDKILMGSERKSAVISEESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPDKDETSMSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLKQATSLAREMVTKYGMGNEVGLATHNYNDDGRSLSSETRLLIEKEVKHFLERAYHNAKTILTTHNKELHALANALLEHETLTGNQIKTLLAQVKSQKQQQSHIVEPQSSSQSNTAPPPSNPAASAAAAAAAAAAAATAAAKGAAAKAQGVQVGS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0627 716 PANTHER METALLOPROTEASE M41 FTSH 8 687 - -
Lal25g0627 716 Pfam AAA+ lid domain 412 455 IPR041569 -
Lal25g0627 716 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 264 283 - -
Lal25g0627 716 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 678 697 - -
Lal25g0627 716 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 682 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal25g0627 716 Pfam Peptidase family M41 471 651 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal25g0627 716 Pfam ATPase family associated with various cellular activities (AAA) 260 389 IPR003959 GO:0005524|GO:0016887
Lal25g0627 716 CDD AAA 257 389 - -
Lal25g0627 716 Gene3D - 391 464 - -
Lal25g0627 716 SMART AAA_5 256 392 IPR003593 -
Lal25g0627 716 MobiDBLite consensus disorder prediction 659 682 - -
Lal25g0627 716 SUPERFAMILY FtsH protease domain-like 471 656 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal25g0627 716 MobiDBLite consensus disorder prediction 659 686 - -
Lal25g0627 716 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 8 687 - -
Lal25g0627 716 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Lal25g0627 716 Gene3D Peptidase M41 465 664 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal25g0627 716 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 218 652 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal25g0627 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 484 IPR027417 -
Lal25g0627 716 Gene3D - 210 390 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0627 Lal-Chr25 4812286 4818334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0627 65 652 Miscellaneous Gene Families AT5G53170 52.295 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0627 K08955 - jre:109020493 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0627 25 4812286 4818334 Lal25g0627 25 4812286 4818334 ECH
Lal25g0627 25 4812286 4818334 Lal10g0732 10 15053541 15060227 LSH