Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0732 ATGTACATGAAGATGACATTAAATCAGCTGCTGGTTGAGCTAGATGGATTCAAACAGAATGAAGGCATAATTGTGATTGCAGCTACTAATTTTCCCGAGTCATTGGATAAGGCTTTGGTGAGACCTGGACGGTTTGATCGCCATGTTGTTGTTCCCAATCCAGATGTAGAAGGAAGACGGCAGATTTTGGAATCATACATGTCAAAGGTTTTGAAGTGTGGTGATGTTGATCTAATGATCATTGCTCGAGGAACACCTAGGTTCTCTGGTGCTGACCTTGCAAACTTGGTTAACGTTGCTGCTCTCAAGGCTGCAATAGATGGCGCTAAAACTGTGAGCATGGCTGATTTAGAACATGCAAAGGACAAGATCTTAATGGGAAGCGAACGCAAGTCAGTTGTCATATCGGAAGAGTCGCAAAAGTTGACTGCTTTCCATGAGGGTGGCCATGCCCTTGTGGCCATTCACACTGATGGGGCCCTTCCTGTTCACAAGGCAACAATAGTTCCCCGCGGGATGGCTCTTGGCATGGTTACCCAATTGCCTGACAAGGACGAGGCCAATATGTCATGTAAACTGATGCTTGCCCGGCTCGATGTTTGCATGGGAGGCCATGTTGCTGAAGAGCTAATTTTTGGAGAAAATGAAGTCACTTCCGGCGCATGA 666 0.464 MYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILESYMSKVLKCGDVDLMIIARGTPRFSGADLANLVNVAALKAAIDGAKTVSMADLEHAKDKILMGSERKSVVISEESQKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPDKDEANMSCKLMLARLDVCMGGHVAEELIFGENEVTSGA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0732 221 Pfam ATPase family associated with various cellular activities (AAA) 5 52 IPR003959 GO:0005524|GO:0016887
Lal10g0732 221 Pfam Peptidase family M41 134 221 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal10g0732 221 CDD AAA 4 52 - -
Lal10g0732 221 Gene3D - 1 53 IPR027417 -
Lal10g0732 221 Gene3D Peptidase M41 128 221 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal10g0732 221 PANTHER BNAA04G15330D PROTEIN 2 221 - -
Lal10g0732 221 PANTHER METALLOPROTEASE M41 FTSH 2 221 - -
Lal10g0732 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 148 IPR027417 -
Lal10g0732 221 Pfam AAA+ lid domain 75 118 IPR041569 -
Lal10g0732 221 Gene3D - 54 127 - -
Lal10g0732 221 SUPERFAMILY FtsH protease domain-like 134 221 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal10g0732 221 ProSitePatterns AAA-protein family signature. 23 41 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0732 Lal-Chr10 15053541 15060227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0732 2 221 Miscellaneous Gene Families AT5G53170 65.455 2.91e-100 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0732 K08955 - egr:104436312 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0627 25 4812286 4818334 Lal10g0732 10 15053541 15060227 LSH