Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0457 ATGAGTAGAAAGAAAATGAGATTTTCAGTTAGTAGTAATATTGAAGAGGCTGCAGTGAACTTCTTCAACTATCTCTTGCAGGAGAAGCCTCAAATTGCATTCTTCATTCCACTGATTTTGATTGCTTGGGCTATTGAGAGATGGGTCTTCTCTTTTTCTACTTGGGTTCCTCTTGTACTTGCTGTTTGGGCAACTATGCAGTATGGTAGATATCAAAGAAAACTTCTAGAAGAGGACTTGGATAAGAAATGGCGAAGAATCCTACTGAATTCCTCGCCCATCACGCCATTGGAGCACTGCGAGTGGCTGAATAAGCTGTTGACAGAAATCTGGCCGAACTATTTTAGCCCAAAGCTCTCACTAAAGTTATCAGAATTAGTTGAGACACGTTTAAAGCTCCGGAAGCCAAGACTATTAGAAAGAGTTGAGCTGCAGGATTTTTCACTAGGATCATGCGCTCCTAGCTTAGGCCTTCAAGGGATGCGATGGTCAACTATTGGTGATCAGCGAGTGATGCAAGTGGGTTTCGATTGGGACACAAATGAAATGAGCATTTTGTTGCTTGCCAAGCTTGCAAAGCCATTGATTGGAACTGCTCGAATTGTGGTTAACAGTCTTCATATCAAGGGTGATCTTCTCATTACACCAATTCTTGATGGGAAAGTACTTTCATATTCATTTGTATCAACTCCTGAGGTGAGAGTAGGAATTGCCTTTGGAAGCGGTGGAAGCCAGTCACTTCCTGCCACTGAGTGGCCTGGTGTTTCTTCCTGGCTGGAAAAACTATTTGCTGACACCTTGGTTAAATCCATGGTGGAACCTCGGCGTCGTTGTTTGTCTTTGCCCATGGTTGATTTAAAGAAAAAAGTTGTTGGAGGCATTATATATATTAAAGTGATTTCAGCAAATAAACTTTCTAGGAGTTGTTTCAAGGTATCTAGGAGGCAGCAAAATGGCACAGCCTATGGTTTTTCGGAAGACAATTTTGATGACAAGTACCTAAATACATTTGTAGAGGCAGAAGTTGAGGAATTAACCAGAAGAACAGATGTGAGATTGGGTTCAACCCCTAGGTGGGATGCACCATTTAATATGGTTTTACATGATAGTGCGGCAACTCTGCGTTTCAATCTTTATGAATCTTGTCCCAGCAGTGTGAAGTGTGATTATCTAGCAAGTTGTGAAATCAAGATAATGCATGTTGAAGGTGATTCAACAATAATGTGGGCGATAGGACCTGATTATGAGGTCATAGCAAAGCAAGCACAGTTTTGTGGAGATGAAATTGAAATGGTTGTCCCATTTGAGGGGGCTAACTCTGCAGAGTTGAAGGTTAGGATTGTAATAAAAGAGTGGCAATTTTCTGATGAGTCTCATAGCTTGAGCAACATCTGGGCTAGCTCTCAGCAACCCCTTAACGGATCATCAAATCTTCAGTTAAAAACTGGAAGGAAACTTATCATAAGTGTTGTGGAAGGAAAGAATCTCGCTGTGAAAGACAAATCTGGAAAATTCGACCCGTACTTCAAATTGCAATATGGAAAGGTTATCCAGAAAACAAGGACCGCTCGTTCTCCAAATCCTGTCTGGTATCAGACATTTGAATTTGATGAGATTGGTGGTGGCGAATACTTGAAAATAAAAGGCTTTACTGAAGAAACTTTTGGAGATGAAAACATTGGTAGCGCACAAGTAAATTTGGAAGGATTAACCGATGGATCGGTCAGGGATGTATGGGTCCCTCTTGAAAGAGTGCAGTGTGGTGAATTAAGACTTAAGATCGAAGCAGTTAAGGTCGAAGATCAAGAAGGATCAAGGGGTTCAGCTCTGGGATCAAGCAATGGTTGGATAGAACTTGTTCTAATTGAAGGAAGGGATCTTATCGCTGCCGATCGTAGAGGCACAAGTGATCCATATGTGAGGGTACACTATGGAAACTTAAAGAAAAGGACAAAGGTTATATCCAAAACTCTTAACCCATGCTGGAACCAGACCCTTGAGTTCCCTGATGATGGTAGTCCCTTGGAACTACATGTTAAGGACCACAATGCATTGCTACCAACATCAAGCATAGGCGAATGCGTCGTAGAATATCAACGGTTGCCGCTAAACCAGATGGCCGACAAGTGGATACCTCTTCAAGGGGTTAAAAGGGGTGAGATTCACATCCAAATTACTAGAAAAGTTGCAGAGATTCAAAAGAGAAATGCTGTAGATGAAGAACTTTCCTTAAGTAAATTACACAGAATTCCTAGCCAGATCAAAGAGATTATGATAAAATGCAGGTCTATGATAGAGGATGGAAATCTTGAAGGACTATCCACAACATTAAATGAGCTAGAAACTTTAGAGGATACACAAAGAGGTTATATAGTTCAGCTAGAGACTGAAGAAATGCTTCTTCTCAGCAAAATAAAGGAACTAGGACTTGAAATCATAAGCTCTTCTCCTTCCTCAAGCACAAGATCTTCTTTTGATAGTGGAAATTGA 2490 0.4096 MSRKKMRFSVSSNIEEAAVNFFNYLLQEKPQIAFFIPLILIAWAIERWVFSFSTWVPLVLAVWATMQYGRYQRKLLEEDLDKKWRRILLNSSPITPLEHCEWLNKLLTEIWPNYFSPKLSLKLSELVETRLKLRKPRLLERVELQDFSLGSCAPSLGLQGMRWSTIGDQRVMQVGFDWDTNEMSILLLAKLAKPLIGTARIVVNSLHIKGDLLITPILDGKVLSYSFVSTPEVRVGIAFGSGGSQSLPATEWPGVSSWLEKLFADTLVKSMVEPRRRCLSLPMVDLKKKVVGGIIYIKVISANKLSRSCFKVSRRQQNGTAYGFSEDNFDDKYLNTFVEAEVEELTRRTDVRLGSTPRWDAPFNMVLHDSAATLRFNLYESCPSSVKCDYLASCEIKIMHVEGDSTIMWAIGPDYEVIAKQAQFCGDEIEMVVPFEGANSAELKVRIVIKEWQFSDESHSLSNIWASSQQPLNGSSNLQLKTGRKLIISVVEGKNLAVKDKSGKFDPYFKLQYGKVIQKTRTARSPNPVWYQTFEFDEIGGGEYLKIKGFTEETFGDENIGSAQVNLEGLTDGSVRDVWVPLERVQCGELRLKIEAVKVEDQEGSRGSALGSSNGWIELVLIEGRDLIAADRRGTSDPYVRVHYGNLKKRTKVISKTLNPCWNQTLEFPDDGSPLELHVKDHNALLPTSSIGECVVEYQRLPLNQMADKWIPLQGVKRGEIHIQITRKVAEIQKRNAVDEELSLSKLHRIPSQIKEIMIKCRSMIEDGNLEGLSTTLNELETLEDTQRGYIVQLETEEMLLLSKIKELGLEIISSSPSSSTRSSFDSGN 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0457 829 ProSiteProfiles C2 domain profile. 467 580 IPR000008 -
Lal25g0457 829 PANTHER PLANT SYNAPTOTAGMIN 1 821 - -
Lal25g0457 829 Gene3D C2 domain 600 728 IPR035892 -
Lal25g0457 829 Gene3D C2 domain 473 599 IPR035892 -
Lal25g0457 829 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 613 726 IPR035892 -
Lal25g0457 829 CDD C2 617 713 - -
Lal25g0457 829 ProSiteProfiles C2 domain profile. 586 711 IPR000008 -
Lal25g0457 829 PANTHER OS01G0128800 PROTEIN 1 821 - -
Lal25g0457 829 CDD C2 486 582 - -
Lal25g0457 829 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 484 599 IPR035892 -
Lal25g0457 829 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 330 405 IPR035892 -
Lal25g0457 829 SMART C2_3c 294 410 IPR000008 -
Lal25g0457 829 SMART C2_3c 485 579 IPR000008 -
Lal25g0457 829 SMART C2_3c 616 710 IPR000008 -
Lal25g0457 829 Pfam C2 domain 294 400 IPR000008 -
Lal25g0457 829 Pfam C2 domain 617 713 IPR000008 -
Lal25g0457 829 Pfam C2 domain 485 582 IPR000008 -
Lal25g0457 829 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 96 282 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0457 Lal-Chr25 3138879 3146290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0457 486 747 Lipid Metabolism Gene Families AT3G57880 27.090 6.23e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0457 - - gmx:100807475 1323.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0978 10 17048207 17056497 Lal25g0457 25 3138879 3146290 ECH
Lal25g0457 25 3138879 3146290 Lal25g0457 25 3138879 3146290 ECH
Lal25g0457 25 3138879 3146290 Lal10g0978 10 17048207 17056497 LSH