Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0978 ATGGGTAGAAAGAAAGGGGTATCTTCAATTGAAGAGGCTGAAGTGAATTTCGCCAACTATCTCATGCAGGAGAAGCCGAAAATTCTGTTCTTCATTCCACTTATTTTGATTGCTTGGGCTATAGAGAGATGGGTCTTCCCTCTTTCCACTTGGGTTCCTCTTCTACTTGCTGTTTGGGCAACTATACAGTATGGTAGATATCAAAGAAAACTCCTAGTGGAGAACTTGGATAAGAAATGGCAAAGAATCATCCTGAATTCTTGGCCTATCACACCATTGGAGCACTGTGAGTGGCTGAATAAGCTGTTGACAGAAATCTGGCCTAACTATTTAAACCCGAAGCTCTCACTAAGGTTATCAGCTAAAGTTGAGAAACGTTTAAGGCTCCGGAAGCCAAGGCTATTAGAAAGAGTTGAGCTGCAGGAGTTTTCACTAGGATCATGTCCTCCTACCTTGGGTCTTCAAGGGATGAGATGGTCAACTATTGGTAATCAGCGAGTCATGCAAGTGGATATCGATTGGAACACAAATGAAATGAGCATTTTATTACTTGCTAAGCTTGCAAAGCCATTGATGGGAACTGCTCGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTCATAATACCAATTCTAGATGGAAAAGCACTTTTGTATTCATTTGTATCAACTCCTGAGGTGAAAATAGGAATTGCCTTTGGAAGCGGTGGAAGCCAGTCACTACCTGCCACTGAGTGGCCTGGTGTTTCTTATTGGCTGGAAAAACTTTTTGTTGACTCCTTGGTTAAAAACATGGTGGAACCTCGACGCCGTTGTATCCCTTTGTCTGCTGTTGTTTTAAGGAAAAAGGTTGTTGGATGCATAATATATATTAAAGTGGTTTCAGCAAATAAACTTTGTAGGAATTGTTTCAAGGTATATAGGAAGCAACAAAATGGTACAGCTACAACCAGTGGTTTTTCAGAAAACAGTTTTGATGACAAGGATCTACAAACATTTGTAGAGGCAGAAGTTGGGGAATTAACCAGGAGAACAGATGCGAGACTGGGTTCAACCCCTAGATGGGATACACCATTTAATATGGTCTTGCATGATAGTAAAGGAATCGTGCGATTCAATCTTTATGAATCTCATCCCAGCTGTGCGAAGTGTGACTATCTAGCAAGTTGCGAAATTAAGATAAGACATGTTGAGGATGACTCAACGATACTGTGGGCAATAGGACCAGATTCCGGGGTCATAGTAAAGCAAGCACAGTTTTGTGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGGGCTAACTCTGCAGAGTTGAAGGTGAGCATTGTAATAAAAGAGTGGCAATTTTCTGATGGGTCTCATGACTTGAATAACACCCGGGCTTGCTCTCAGCAATCCCTTAGTGCATCACCAAACCTTCAGTTAGGAACTGGAAGGAAGCTTCACATAACTGTTGTGGAAGGAAGGAATCTTGCTGCGAAAGACAAATTTGGAAAATTTGACCAGTACTTCAAATTGCAGTATGGAAAGGCTATCCAGAGAACAAGGACTGTCTATAATCAAAATCCTGTCTGGAACCAGACATTTGAATTTGATGAGATTAGTGACTGCGAATACTTAAAAGTAGAAGGCTTCAGTGAAGAAATTTTTGGAGATGAAAGCATTGGTGGTGCACAAATAAATTTGGAAGGATTAACTGATGGATCAGTCAGGGATGTATGGGTCCCTCTTGAAAAAGTGTGGTGTGGTGAATTAAGACTTAAAATAGAAGCAGTAAAGATCAAAGACCAAGAAGGATCAAGGGATTCTGTTCCGGTATCAAGCAATGGTAGGATAAAACTTGTTCTGATTGAAGGAAGAGATCTTGTTGCTGCCGATCTCAGAGGCACAAGCGATCCATATGTGAGAGTACATTATGGAAACTTAAAGAAAAGGACAAAGGTTATACACAAAACTCTTAACCCTCGCTGGAACCAGACCCTAGAGTTCCCTGATGATGGTAGTCCCTTGGAACTACATGTTAAGGACCACAATGCATTGCTACCAACATCAAGTATAGGTGAATGTGTTGTAGAATATCAAGGGTTGCCTCTAAACCAGATGGCTGATAAGTGGATACCTCTCCAAGGGGTGAAAAGGGGTGAGATTCACATCCAAATTACTAGAAAAGGTCAAGAGTATCAAAGGAGAAATAGTTGGGACTCTGAACCTACGCTAAGTGAACTACATGAAATTCCTAACCAGATAAAACAGATGATGATAAAGTGTAGGTGTATGATAGAGGATGGAAATCTTGAAGAGCTGTCTACAACTTTGAGTAAGCTAGAAACTCTAGAGGATACACAGGGAGGCTATATAGTTCAGTTGGAGACTGAACAAATGCTTCTTCTCAGCAAAATAAAGGAACTGGGTCAAGAGATGTTAAGTTCTCCTTATTATCCTTCCCATAGCAGAAGATTTTCTTCTGATGTGTAA 2484 0.4074 MGRKKGVSSIEEAEVNFANYLMQEKPKILFFIPLILIAWAIERWVFPLSTWVPLLLAVWATIQYGRYQRKLLVENLDKKWQRIILNSWPITPLEHCEWLNKLLTEIWPNYLNPKLSLRLSAKVEKRLRLRKPRLLERVELQEFSLGSCPPTLGLQGMRWSTIGNQRVMQVDIDWNTNEMSILLLAKLAKPLMGTARIVINSLHIKGDLLIIPILDGKALLYSFVSTPEVKIGIAFGSGGSQSLPATEWPGVSYWLEKLFVDSLVKNMVEPRRRCIPLSAVVLRKKVVGCIIYIKVVSANKLCRNCFKVYRKQQNGTATTSGFSENSFDDKDLQTFVEAEVGELTRRTDARLGSTPRWDTPFNMVLHDSKGIVRFNLYESHPSCAKCDYLASCEIKIRHVEDDSTILWAIGPDSGVIVKQAQFCGDEVEMVVPFEGANSAELKVSIVIKEWQFSDGSHDLNNTRACSQQSLSASPNLQLGTGRKLHITVVEGRNLAAKDKFGKFDQYFKLQYGKAIQRTRTVYNQNPVWNQTFEFDEISDCEYLKVEGFSEEIFGDESIGGAQINLEGLTDGSVRDVWVPLEKVWCGELRLKIEAVKIKDQEGSRDSVPVSSNGRIKLVLIEGRDLVAADLRGTSDPYVRVHYGNLKKRTKVIHKTLNPRWNQTLEFPDDGSPLELHVKDHNALLPTSSIGECVVEYQGLPLNQMADKWIPLQGVKRGEIHIQITRKGQEYQRRNSWDSEPTLSELHEIPNQIKQMMIKCRCMIEDGNLEELSTTLSKLETLEDTQGGYIVQLETEQMLLLSKIKELGQEMLSSPYYPSHSRRFSSDV 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0978 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 482 595 IPR035892 -
Lal10g0978 827 PANTHER PLANT SYNAPTOTAGMIN 6 816 - -
Lal10g0978 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 610 726 IPR035892 -
Lal10g0978 827 ProSiteProfiles C2 domain profile. 462 578 IPR000008 -
Lal10g0978 827 ProSiteProfiles C2 domain profile. 596 709 IPR000008 -
Lal10g0978 827 Pfam C2 domain 483 580 IPR000008 -
Lal10g0978 827 Pfam C2 domain 613 711 IPR000008 -
Lal10g0978 827 Pfam C2 domain 291 402 IPR000008 -
Lal10g0978 827 Gene3D C2 domain 598 726 IPR035892 -
Lal10g0978 827 Gene3D C2 domain 471 597 IPR035892 -
Lal10g0978 827 SMART C2_3c 614 708 IPR000008 -
Lal10g0978 827 SMART C2_3c 483 577 IPR000008 -
Lal10g0978 827 SMART C2_3c 290 408 IPR000008 -
Lal10g0978 827 CDD C2 615 711 - -
Lal10g0978 827 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 92 278 IPR031468 GO:0008289
Lal10g0978 827 CDD C2 484 580 - -
Lal10g0978 827 PANTHER OS01G0128800 PROTEIN 6 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0978 Lal-Chr10 17048207 17056497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0978 619 723 Lipid Metabolism Gene Families AT3G61300 27.434 4.76e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0978 - - gmx:100789237 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0978 10 17048207 17056497 Lal25g0457 25 3138879 3146290 ECH
Lal10g0978 10 17048207 17056497 Lal10g0978 10 17048207 17056497 ECH
Lal25g0457 25 3138879 3146290 Lal10g0978 10 17048207 17056497 LSH