Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0310 ATGAGATTCCTTAGAACAATCTTCACCCACCACAAGCACCACCACTATCATCTATTAAACCCCAAATCCATTTCTTCATCTCCCATTTCCCTTCAACCACAACAAAATCCACAAACTCAAATCAATGACACTAACAACACCACAACAACAACAATTAGTAGTAATAGCAGTAGCAATGCTTGGAGCAATTATACCCATTTAATTGAAACCCCACTCAGGGCTACAACTGTAAAAAACCCAATTGGGGGAACAAAGAAAAAAGATAAAGTTCAATGGGTATGCTGTGACTGTGGCTTTTCAACTGGGAAATGGTGGGGCACGTGCCTCTCTTGTGAGAAAACTGGTACTATGAAGGAATTTCATGAAGCTAAATCAATTGATGGTGCTGATAACAAAGTGAAGGGTGGGTTAGCGATTTCTGAAGATGCAGTGGGCTTGTGGCTTCCACATAAAGCAGATCAATCGTGTCCCGTCAAATTGGAGGAGGTTAACCGTGGTTTTAATCACAAACATTGGAGAATTCCTTTGTCTGGTTCTTTTGGAAATGAAGTTTCTACAGTGCTTGGTGGTGGTATTGTACCAGGCTCTTTGACTTTGATTGGCGGTGATCCTGGTGTTGGTAAGAGTACTCTGGTGTTGCAGATTGCAGCATTGATAGCAGGACACAATGAAGATGCAGCTTCTCCAGTAGTATATGTCTCTGGTGAAGAGAGCCTTGAGCAAATTGGTAACAGAGCAGATCGCCTTGGGATTAAATCGGATATTTATTTATATTCAAGTACTGATATTGAGGATATATTGAAGAAAGCTCAGGTTGTCTCCCCTCGTGCTCTAATTGTTGATTCGATACAAACTGTTTATTTGAAAGGAGTGTTAGGAAGCGCTGGAGGGATTGCACAGGTTGGACATGTGACAAAATCTGGAGACATAGCGGGACCTCGTGTGTTGGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGTGAAAAGTGCTCTTCCTATCGTATGCTTCGTGCTGTGAAAAATCGATTTGGATCCGCTGATGAGCTTGGAGTTTTTGAGATGTCACAATCAGGACTCCAGTCTGTTTCAAATGCCAGTGAAATATTCCTCAGTGAGCAATGCTCTGATTCACAATTTTTAGCTGGACTAGCTATTGCTGTAATAATGGATGGTTCAAGAACTTTCTTAATTGAAGTCCAGGCACTGTGCCTTTCACATTGCCCAGTGACAGTTTCATCTTCGGGGGTGATTAATGGGATCCCAGCAAATAGAGTTAATATGGTTAAATGTGTCCTTGTAAAACAAGCTGGTCTTCAACTCCAAGAAAATGCTGTATTTTTAAACGTTGTTAGTGGATTGACAATAGAAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATTCCAAAGGGCATTGCATTCATTGGTGAAATTGGTCTCGGTGGAGAGCTTCGCATGGTTCCTAGAATTGAGAAAAGGGTATACACAGTGGCTAAGTTGGGTTACAAAATATGTGTTGTACCAAAGCAAGCAGAAAAAGTTTTTGAAGCTGAAAGTCTAGGAAAGACAAAAGTTGTAGGATGCAATAATCTGAATGAGGTTATTAATGTTGTATTCCGCAAGAGAGAATGA 1662 0.4103 MRFLRTIFTHHKHHHYHLLNPKSISSSPISLQPQQNPQTQINDTNNTTTTTISSNSSSNAWSNYTHLIETPLRATTVKNPIGGTKKKDKVQWVCCDCGFSTGKWWGTCLSCEKTGTMKEFHEAKSIDGADNKVKGGLAISEDAVGLWLPHKADQSCPVKLEEVNRGFNHKHWRIPLSGSFGNEVSTVLGGGIVPGSLTLIGGDPGVGKSTLVLQIAALIAGHNEDAASPVVYVSGEESLEQIGNRADRLGIKSDIYLYSSTDIEDILKKAQVVSPRALIVDSIQTVYLKGVLGSAGGIAQVGHVTKSGDIAGPRVLEHIVDVVLYMEGEKCSSYRMLRAVKNRFGSADELGVFEMSQSGLQSVSNASEIFLSEQCSDSQFLAGLAIAVIMDGSRTFLIEVQALCLSHCPVTVSSSGVINGIPANRVNMVKCVLVKQAGLQLQENAVFLNVVSGLTIEETAGDLAIAAAICSSFLEFPIPKGIAFIGEIGLGGELRMVPRIEKRVYTVAKLGYKICVVPKQAEKVFEAESLGKTKVVGCNNLNEVINVVFRKRE 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0310 553 PANTHER DNA REPAIR-LIKE PROTEINRADA 1 551 - -
Lal25g0310 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 355 IPR027417 -
Lal25g0310 553 PRINTS DNA repair protein radA signature 94 118 - -
Lal25g0310 553 PRINTS DNA repair protein radA signature 186 214 - -
Lal25g0310 553 PRINTS DNA repair protein radA signature 334 360 - -
Lal25g0310 553 PRINTS DNA repair protein radA signature 413 436 - -
Lal25g0310 553 SUPERFAMILY Ribosomal protein S5 domain 2-like 341 549 IPR020568 -
Lal25g0310 553 SMART AAA_5 194 330 IPR003593 -
Lal25g0310 553 Pfam AAA domain 186 271 - -
Lal25g0310 553 Gene3D - 381 553 IPR014721 -
Lal25g0310 553 Gene3D - 183 360 IPR027417 -
Lal25g0310 553 MobiDBLite consensus disorder prediction 26 55 - -
Lal25g0310 553 Pfam Subunit ChlI of Mg-chelatase 434 520 - -
Lal25g0310 553 PANTHER DNA REPAIR PROTEIN RADA 1 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0310 Lal-Chr25 2128666 2137082 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0310 K04485 - gmx:100791181 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0310 25 2128666 2137082 Lal25g0310 25 2128666 2137082 ECH
Lal25g0310 25 2128666 2137082 Lal18g0161 18 1291436 1309996 PCT
Lal18g0161 18 1291436 1309996 Lal25g0310 25 2128666 2137082 PCT