Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0200 GGCCTCCAAAATTCCCTATATATAACCTTGTGTATCCACACTCTTTCAACAACTATACCTCTGATTTTCTACTACCCCACCCTGCATTTTAGCAGAGTCATTTTTGTTACTACAGGCCATATATCATCACTTTATTCTTTCCTTTATATGGATCCTCTATTCTCTCTTCTCACATTCTCACTCATAATTTGTTGTACTAGTGCTAAGGGTCCACCTTCACCTGGCTACTATCCTAGTTCCAAAGTTAGTCCTGTTAGCTTTGGTCAAGGATTTAGAAACCTATGGGGACCTCAGCATCAGAAACTTGACCAAGGCTCATTAACAATATGGCTTGACTCTAACTCAGGGAGTGGATTCAAGTCACTTCATTCTTATAAATCTGGATACTTTGGTGCTGCAATTAAGCTTCAACAGGGTTATACTGCTGGAGTCATTACATGTCTCTATCTTTCAAACAACCAAGTCTACCGAGAAAACCATGATGAAATTGACATTGAGTTCCTTGGTACAACACCAGATAAGCCATATGTATTGCAAACAAATGTGTTCATCAGAGGAAGTGGAGATAGAAACATAGGAAGAGAGATGCAGTTTCATCTTTGGTTTGACCCTACACAAGATTTTCACAACTATGCTATTCTGTGGAAACCCAATGAGATCATATTTTTAGTAGATGATGTCCCAGTGAGGAGTTATCCTAGGAAGAGTGATGCTACATTCCCTACAAGACCAATGTATGTGTATGGATCAATATGGGATGCATCTTCATGGGCTACAGAGGATGGAAAATACAAAGCTGATTATAAATACCAACCCTTCATTGGTAAATATACAAACTTCAAACTTCAAGGTTGCACCAATGAAGCCTCCACCTCATGCAAGCCACCGTCAGCCTCGCCATCCGGCGGCAACCGCAGCCTTAGCACTCAACAGCTTGATGCAATGCAATGGGTCCAAAACAACTACTTGGTCTATAACTATTGTCATGATCCTAGGAGAGACCATACACTAACTCCTGAATGCTAA 1026 0.4064 GLQNSLYITLCIHTLSTTIPLIFYYPTLHFSRVIFVTTGHISSLYSFLYMDPLFSLLTFSLIICCTSAKGPPSPGYYPSSKVSPVSFGQGFRNLWGPQHQKLDQGSLTIWLDSNSGSGFKSLHSYKSGYFGAAIKLQQGYTAGVITCLYLSNNQVYRENHDEIDIEFLGTTPDKPYVLQTNVFIRGSGDRNIGREMQFHLWFDPTQDFHNYAILWKPNEIIFLVDDVPVRSYPRKSDATFPTRPMYVYGSIWDASSWATEDGKYKADYKYQPFIGKYTNFKLQGCTNEASTSCKPPSASPSGGNRSLSTQQLDAMQWVQNNYLVYNYCHDPRRDHTLTPEC 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0200 341 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 53 341 - -
Lal25g0200 341 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 304 341 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal25g0200 341 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 66 277 IPR000757 GO:0004553|GO:0005975
Lal25g0200 341 Gene3D - 67 341 - -
Lal25g0200 341 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 53 341 IPR044791 GO:0004553
Lal25g0200 341 SUPERFAMILY Concanavalin A-like lectins/glucanases 86 341 IPR013320 -
Lal25g0200 341 Pfam Glycosyl hydrolases family 16 89 269 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0200 Lal-Chr25 1366188 1368346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0200 54 341 Glycoside Hydrolase AT3G44990 65.411 3.67e-140 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0200 K08235 - gmx:100776165 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0200 25 1366188 1368346 Lal25g0200 25 1366188 1368346 ECH
Lal25g0200 25 1366188 1368346 Lal1g0399 1 2454774 2457079 PCT
Lal1g0399 1 2454774 2457079 Lal25g0200 25 1366188 1368346 PCT