Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0399 ATGCCATCATCATCACTATTTTCTTTCCTCTATATGGCTCCTCTCTTTTCTCTTCTTTCACTCTCATCAATTATTTTTTCTAGTGCTCAAGGTCCACCTTCACCTGGATACTACTTTAGTTCTAAAATTAGTACTGTTAGCTTTGGTGAAGTGTTTAGAAACCTCTGGGGACCTCAGCATCAAAGACTTGACCAAGGCTCATTGACAATATGGCTTGACTCTACATCAGGGAGTGGATTCAAGTCACTTCATTCATATAGATCTGGGTACTTTGGTGCTGCAATTAAGCTTCAACCTGGTTATACTGCAGGAGTCATAACATCCATCTATCTTTCAAACAACCAAGACCACCCAGGGAACCATGATGAAATTGACATTGAGTTCCTTGGTACTACACCAGGTAAGCCATATGTGTTGCAGACAAATGTATACATCAGAGGAAGTGGTGATGGAAATATTATAGGAAGAGAGATGAAGTTTCATCTTTGGTTCGACCCTACACAAGATTTTCACAACTATGCTATTCTATGGAAACCCAGTGAGATAATATTTTTTGTGGATGATGTGCCCATAAGGAGGTATCCTAGGAAGAGTGATGCTACATACCCTACAAGACCAATGTATGTCTATGGATCAGTTTGGGATGCATCTTCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTATAGATACCAACCCTTCATTGGTAGGTACAGAAACTTTAGATTGCAAGGTTGCACCATTCAAAGCCCTTATTCTTGCAAGCCACCTTCTGCCTCACCCTCTGGCTATGGGAGCCTAAGCCCTCAGCAATTTGCAGCCATGCAATGGGCCCAAAACAACTACTTGGTCTACAATTATTGTCATGACCCTAGAAGAGACCACACACTTATCCCAGAGTGCTAG 909 0.4147 MPSSSLFSFLYMAPLFSLLSLSSIIFSSAQGPPSPGYYFSSKISTVSFGEVFRNLWGPQHQRLDQGSLTIWLDSTSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSIYLSNNQDHPGNHDEIDIEFLGTTPGKPYVLQTNVYIRGSGDGNIIGREMKFHLWFDPTQDFHNYAILWKPSEIIFFVDDVPIRRYPRKSDATYPTRPMYVYGSVWDASSWATEDGKYKADYRYQPFIGRYRNFRLQGCTIQSPYSCKPPSASPSGYGSLSPQQFAAMQWAQNNYLVYNYCHDPRRDHTLIPEC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0399 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 18 302 IPR044791 GO:0004553
Lal1g0399 302 Gene3D - 28 302 - -
Lal1g0399 302 Pfam Glycosyl hydrolases family 16 50 231 IPR000757 GO:0004553|GO:0005975
Lal1g0399 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 27 239 IPR000757 GO:0004553|GO:0005975
Lal1g0399 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 18 302 - -
Lal1g0399 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
Lal1g0399 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 265 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal1g0399 302 PIRSF EndGlu_transf 11 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0399 Lal-Chr1 2454774 2457079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0399 16 302 Glycoside Hydrolase AT3G44990 67.010 6.81e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0399 K08235 - gmx:100781528 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0399 1 2454774 2457079 Lal1g0399 1 2454774 2457079 ECH
Lal25g0200 25 1366188 1368346 Lal1g0399 1 2454774 2457079 PCT
Lal1g0399 1 2454774 2457079 Lal25g0200 25 1366188 1368346 PCT