Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0187 ATGGAGAGAGAAAAAGAGATGAAACAATCCAAATTCAAGAGGATTTGTGTGTTCTGTGGTAGCAGCCAAGGGAATAAAACTACTTATAAGGATGCTGCTATTGAACTTGGAAGTGAATTGGTATCAAGAAATATTGATCTGGTTTATGGAGGAGGTAGCATTGGTTTGATGGGTTTGATTTCTCATGCTGTTTATGATGGTGGTCGCCATGTAATAGGAGTCATTCCCAATACACTTAATGCAAGAGAGCTTACAGGAGAAACAGTAGGAGAAGTGAAAGCAGTAGCAGACATGCATCAAAGGAAAGCAGAGATGGCTAAACATTCTGATGCCTTTATTGCCTTACCTGGTGGCTATGGGACACTTGAGGAGCTTCTTGAGGTTATTACCTGGGCTCAACTTGGCATTCATGATAAACCGGTGGGATTGTTGAATGTTGATGGATACTACAATACCTTTTTGACTTTCATTGACAAAGCTGTGGAAGAAGGGTTCATAAGCCCCACAGCTCGTCACATAATTGTGTCTGCCCCAACATCAAAGGACCTTGTCAAAAAGATGGAGGAATATTTCCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAAATGAACAACAACATTAG 630 0.4111 MEREKEMKQSKFKRICVFCGSSQGNKTTYKDAAIELGSELVSRNIDLVYGGGSIGLMGLISHAVYDGGRHVIGVIPNTLNARELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNTFLTFIDKAVEEGFISPTARHIIVSAPTSKDLVKKMEEYFPQHERVASKLSWENEQQH 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0187 209 SUPERFAMILY MCP/YpsA-like 11 190 - -
Lal25g0187 209 TIGRFAM TIGR00730: TIGR00730 family protein 13 190 IPR005269 GO:0009691|GO:0016787
Lal25g0187 209 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 1 209 - -
Lal25g0187 209 PANTHER LOG FAMILY PROTEIN YJL055W 1 209 - -
Lal25g0187 209 Pfam Possible lysine decarboxylase 57 187 IPR031100 -
Lal25g0187 209 Gene3D - 2 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0187 Lal-Chr25 1231566 1241004 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0187 K22522 - gmx:100811156 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0187 25 1231566 1241004 Lal25g0187 25 1231566 1241004 ECH
Lal1g0385 1 2348090 2352365 Lal25g0187 25 1231566 1241004 ECH
Lal25g0187 25 1231566 1241004 Lal8g0152 8 1034814 1038351 LSH
Lal25g0187 25 1231566 1241004 Lal1g0385 1 2348090 2352365 PCT
Lal25g0187 25 1231566 1241004 Lal2g0299 2 1751782 1754900 PCT
Lal1g0385 1 2348090 2352365 Lal25g0187 25 1231566 1241004 PCT
Lal2g0299 2 1751782 1754900 Lal25g0187 25 1231566 1241004 PCT