Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0038 ATGGGAAACTCATTTGGTTGCTCAGCCTCCGGCGAGAGGTTGGTGTCAGCGGCGAGGGACGGTGACTTGGTGGAGGCGAAGATGCTTCTGAACTGTAACCCTTATCTTGCAAAGTACTCCACTTTTGGTGGCCTCAATTCCCCTCTCCACTTCGCTGCTGCCAAGGGCCATAACGAGATTGTAGCTTTGTTGCTTCACAATGGAGCTGATGTCAATTCTAGAAATTATTGTGGCCAGACGGCCTTGATGCAAGCTTGTAGATATGGCCATTGGGAAGTTGTACAGACCCTTCTGCTCTTCAGATGCAACGTTATGAGAGCAGATTATATCAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGAATGGGCATGTAAGATGTCTTAGACTTGTCATGGCTGACCTTGTTCCAAGTGCTCCTTATGAAGCTATACATGTTTGCAGAGATGTTGATAAGGGTGATGGATCATACATGAAAGGAAAACATGAACAAAGTTCCATGTCCAAGTTCGTAAATAAGAAAGCTGATGGTGGTATTACCGCCCTTCATATGGCCGCATTAAATGGGCATTTTGGTTGTGTACAACTGCTACTTGATCTTAATGCAAATGTATCTGCTGTGACATTTCACTATGGAGCATCAATGGATTTAATAGGTGTGGGCTGGGAGCACTCCATTGCACTATGCTGCTTGTGGGGGCAATTTAAAATGCTGTCAGGCAAGAATTGCTTTATCCTCCTTGCTAGAGGTGCGAGTCGGATGTCTTTGAATTGCAATGGGTGGCTTCCTCTTGAAGTTGCTAAGATGTGGGGGCGTCATTGGCTCGAACCATTGCTGGCACCCAGTTCTAGTGCTACAATACCAACATTCCCTCATTCAAATTACTTGTCCTTGCCTCTCATGAGCGTGCTCAACATAGCCAGAGAGTATGGATTGCAATCATCTGCAACCACGACCTCATCTCATGATATTGACTTTTGTGCTGTCTGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTGGGCATGAGCTATGTGTAAGGTGTGCACTCTACCTTTGCTCAACAAACAATGCTTCTTCTGAAACGAGTGGCCACCCTGGGTCCATCCCTTGCCCCCTTTGTAGACACGGAATTATCTCTTTTGTTAAGTTACCAGGTTCCCAAGCAAAAGAAAATAAATTACATGTTTCTCTTGGCCTGTGTACCCCATGCATGCTACATCCCCGAGACCTGGAACAGCCATCTCTTTCTCATACACCTGAGTTTCAAAGAAATTGTGTCGCTTCTGTTCCTTCTGATATGCTCTGCCCCGTCACTTGTAGTCCATTTCCATCTATGAGTATTCCTCTCTGTACCTGCAATGATGATTCATGTCCATCTTTTGAACCCCAAGAAATAGAAACAAATGATGAATCACCTCGTCACTCACAGGCATCAATGATAAATCAGGATAAAATGGAAGGGCCAAGACTGGATAAAACAACTTGTTCAAGCATGTTTTGGGGCAGAAGAAGTTGCAGCAGGGAGAATCAATGCAATTCAGAAATAAATGCTTGA 1563 0.453 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPYLAKYSTFGGLNSPLHFAAAKGHNEIVALLLHNGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYISGRTALHFAAVNGHVRCLRLVMADLVPSAPYEAIHVCRDVDKGDGSYMKGKHEQSSMSKFVNKKADGGITALHMAALNGHFGCVQLLLDLNANVSAVTFHYGASMDLIGVGWEHSIALCCLWGQFKMLSGKNCFILLARGASRMSLNCNGWLPLEVAKMWGRHWLEPLLAPSSSATIPTFPHSNYLSLPLMSVLNIAREYGLQSSATTTSSHDIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNASSETSGHPGSIPCPLCRHGIISFVKLPGSQAKENKLHVSLGLCTPCMLHPRDLEQPSLSHTPEFQRNCVASVPSDMLCPVTCSPFPSMSIPLCTCNDDSCPSFEPQEIETNDESPRHSQASMINQDKMEGPRLDKTTCSSMFWGRRSCSRENQCNSEINA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0038 520 Pfam Ankyrin repeat 178 208 IPR002110 GO:0005515
Lal24g0038 520 Gene3D - 4 152 IPR036770 -
Lal24g0038 520 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Lal24g0038 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 400 IPR013083 -
Lal24g0038 520 MobiDBLite consensus disorder prediction 466 492 - -
Lal24g0038 520 SMART ANK_2a 77 106 IPR002110 GO:0005515
Lal24g0038 520 SMART ANK_2a 111 141 IPR002110 GO:0005515
Lal24g0038 520 SMART ANK_2a 177 206 IPR002110 GO:0005515
Lal24g0038 520 SMART ANK_2a 44 73 IPR002110 GO:0005515
Lal24g0038 520 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Lal24g0038 520 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Lal24g0038 520 PANTHER HOMEOBOX PROTEIN WARIAI 1 520 - -
Lal24g0038 520 ProSiteProfiles Zinc finger RING-type profile. 327 377 IPR001841 -
Lal24g0038 520 SUPERFAMILY RING/U-box 322 383 - -
Lal24g0038 520 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Lal24g0038 520 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Lal24g0038 520 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Lal24g0038 520 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Lal24g0038 520 Gene3D - 153 276 IPR036770 -
Lal24g0038 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 520 - -
Lal24g0038 520 ProSitePatterns Zinc finger RING-type signature. 342 351 IPR017907 -
Lal24g0038 520 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Lal24g0038 520 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Lal24g0038 520 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Lal24g0038 520 SMART ring_2 327 376 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0038 Lal-Chr24 259670 265133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0038 3 217 Miscellaneous Gene Families AT3G12360 29.870 5.79e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0038 K19044 - gmx:100793886 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0813 1 5593304 5598530 Lal24g0038 24 259670 265133 PCT
Lal24g0038 24 259670 265133 Lal1g0813 1 5593304 5598530 PCT