Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0813 ATGGGAAACTCATTTGGGTGTTCAGCCTCCGGCGAGAGGCTGGTGTCGGCGGCGAGGGACGGCGATTTGGTTGAGGCTAAAGTTCTTTTAAAATGGAACCCTGGTCTTGCTAAATATTCAACCTTTGGTGGCCTCAATTCTCCTCTTCATTTTGCAGCTTCTAAGGGCCATAACGAGATTGTCACATTGTTGCTTGAGAATGGAGCTGATGTGAATATAAAAAATTATTGTGGGCAGGTTGTGAGAGCAGATTATCTCAGCAATAGAACAGCCCTTCACTTTGCAGCTGTGAATGGGCATGTGAGATGCATTAGACTAGTTGTCGCCGACTTTGTTCCGAGTGCTCCTTATGAAGCTTTACATGCTCGCGCAGATGCTGACACAACTGTTGGATCAGATGTGAAAAGCGAAGATGAACAAAGGCATGTCTTTCCTTTTCGTCCTGATGGTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGCCATTTTGATTGTGTACAACTGCTACTTGATCTTAATGCAAATGTGTCAACTACAACAGTTCATCATGGAACATCGATTGATTTAATAGGGTCCGGGAGCACTCCATTGCATTACGCTGCATGTGGGGGCAACCTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCCAATCGGATGGCTGTGAACTGCAATGAATGGCTTCCACTTGACATTGCTAGGATGTGGGGGCGCTTTTGGCTTGAACCATTGCTGGCACCCATTTCTGATGCCACAATACCGTCATTTCCGTCTTCGAAGTATTTGTCCTTGCCTCTCATGAGTGTTCTCAACATAGCCAGAGAGTGTGGATTGCAATCATCTTCAACTTCTTCGAATGAAATTGAGTTTTGTGCTGTCTGTCTCGAGACACCATGTTCAGTGGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTAAGCTGCGCTCTCCATCTTTGTTCAACGAGTAATGTTTCTCATGGCATCGGTAACCCTCCTGGTTCTATCCCTTGCCCTCTTTGTAGGCACGGAATTGTGTCGTTTGTCAAGTTACCAGGTTCTCAACCAAAAGAAAATAAATCGAACGTGTCTCTCCGCCTGTGTACACCATGCATGCTACATCCACTTGATGTACATCGACCATCCCTTTCTCATGCATCAGAGATTAGGAGAAATCGTGTAGCTTCTGTTTCTTCAGAGATGCTCTGCTCCATCACTTGTACTCCATTTCCATCGATGGCAATTCCTCTATGTACTTGCAACGGCGGTTCTTGTCCATCATTTCAACCTCGTGAAGTAGAAACAGGAGATGTATCTTCTCGTCAGTCACAAGTGTCAACAGTGGATCAGAATAAAACGAGAGGGCCAAGCGTAGAGAAAACATCATGTACAAACATGTTTCGGGGTAGGAGAAGTTGCAGCCGGGAGCATCGTTGCGATTCCGAAATAAATACTGGAACTCAGTAG 1467 0.4567 MGNSFGCSASGERLVSAARDGDLVEAKVLLKWNPGLAKYSTFGGLNSPLHFAASKGHNEIVTLLLENGADVNIKNYCGQVVRADYLSNRTALHFAAVNGHVRCIRLVVADFVPSAPYEALHARADADTTVGSDVKSEDEQRHVFPFRPDGGITALHMAALNGHFDCVQLLLDLNANVSTTTVHHGTSIDLIGSGSTPLHYAACGGNLKCCQILLARGANRMAVNCNEWLPLDIARMWGRFWLEPLLAPISDATIPSFPSSKYLSLPLMSVLNIARECGLQSSSTSSNEIEFCAVCLETPCSVAAEGCGHELCVSCALHLCSTSNVSHGIGNPPGSIPCPLCRHGIVSFVKLPGSQPKENKSNVSLRLCTPCMLHPLDVHRPSLSHASEIRRNRVASVSSEMLCSITCTPFPSMAIPLCTCNGGSCPSFQPREVETGDVSSRQSQVSTVDQNKTRGPSVEKTSCTNMFRGRRSCSREHRCDSEINTGTQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0813 488 ProSiteProfiles Ankyrin repeat region circular profile. 150 178 - -
Lal1g0813 488 Gene3D - 8 138 IPR036770 -
Lal1g0813 488 Pfam Ankyrin repeats (many copies) 184 234 IPR002110 GO:0005515
Lal1g0813 488 SUPERFAMILY Ankyrin repeat 16 246 IPR036770 -
Lal1g0813 488 PANTHER HOMEOBOX PROTEIN WARIAI 80 484 - -
Lal1g0813 488 PANTHER HOMEOBOX PROTEIN WARIAI 1 80 - -
Lal1g0813 488 SMART ANK_2a 193 222 IPR002110 GO:0005515
Lal1g0813 488 SMART ANK_2a 44 73 IPR002110 GO:0005515
Lal1g0813 488 SMART ANK_2a 150 179 IPR002110 GO:0005515
Lal1g0813 488 SMART ANK_2a 87 117 IPR002110 GO:0005515
Lal1g0813 488 SMART ANK_2a 295 325 IPR002110 GO:0005515
Lal1g0813 488 ProSiteProfiles Ankyrin repeat region circular profile. 193 219 - -
Lal1g0813 488 Pfam Ankyrin repeats (many copies) 46 106 IPR002110 GO:0005515
Lal1g0813 488 Pfam Ankyrin repeats (many copies) 148 171 IPR002110 GO:0005515
Lal1g0813 488 ProSiteProfiles Ankyrin repeat profile. 193 225 IPR002110 GO:0005515
Lal1g0813 488 ProSiteProfiles Zinc finger RING-type profile. 292 342 IPR001841 -
Lal1g0813 488 SUPERFAMILY RING/U-box 291 348 - -
Lal1g0813 488 MobiDBLite consensus disorder prediction 432 461 - -
Lal1g0813 488 Gene3D - 139 242 IPR036770 -
Lal1g0813 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 363 IPR013083 -
Lal1g0813 488 ProSitePatterns Zinc finger RING-type signature. 307 316 IPR017907 -
Lal1g0813 488 ProSiteProfiles Ankyrin repeat profile. 150 182 IPR002110 GO:0005515
Lal1g0813 488 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 80 484 - -
Lal1g0813 488 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 80 - -
Lal1g0813 488 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Lal1g0813 488 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0813 Lal-Chr1 5593304 5598530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0813 17 217 Miscellaneous Gene Families AT1G07710 31.429 3.54e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0813 K19044 - gmx:100812809 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0813 1 5593304 5598530 Lal1g0813 1 5593304 5598530 ECH
Lal1g0813 1 5593304 5598530 Lal24g0038 24 259670 265133 PCT
Lal24g0038 24 259670 265133 Lal1g0813 1 5593304 5598530 PCT