Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1477 ATGGTTTCTGCTTCCTCACTCTCCCATCTCTCTCTTTCTCTCTCCTCCTCCTCCCCTTTCCTTCACAAACCTAAATTCAACTATCCCACCAAAAATAATTTACATTTTAACCCAAAGTTGGTTTCTTTTTCCAACACAAAGAGGATATACGCTACTTCTTCTCAAGTTATGAATCCCTCTCTCTCTAAAACTGACTCTGCTGTTCCAACCACCGTCGACGTTGATTTGGGTGATCGGAGTTATCCCATTTATATCGGATCCGGCCTCCTTCATCAACCCCACCTTCTCCAAAGGCATGTCCATGGAAGGAGGGTCCTTGTGGTCACCAATACCACGGTTGCACCACTGTATCTAGACAAAGTTGTTCATGCTTTAACAACCGAAAACCAGAATGTTTCTGTCGAGAGTGTAATCTTGCCAGATGGTGAGCAATACAAGAACATGGATACTCTTATGAAAGTCTTTGACAAGGCCATCGAGTCAAGATTGGATAGGCGCTCTACATTTGTTGCTCTTGGAGGTGGTGTCATTGGCGACATGTGTGGATATGCTGCTGCTTCCTTCCTGCGTGGTGTTAATTTTATTCAGATTCCTACCACTGTTATGGCACAGGTTGATTCTTCAGTTGGTGGGAAAACTGGGATAAACCATCGCCTTGGAAAGAACTTGATTGGTGCATTTTACCAACCTCAGTGTGTGCTTATAGATACGGACACACTAAATACATTACCAGAAAGGGAACTGGCATCAGGGTTTGCAGAGGTTATAAAATATGGCCTCATTAGGGATGCAGAATTTTTTGAGTGGCAAGAGAAAAATATGCATGCATTATTGGCAAGAGATCCTAATGCACTAGCATATGCTATAAAACGATCATGTGAGAACAAGGCTGAGGTTGTGTCCTTGGATGAGAAGGAAAGTGGACTGAGGGCAACATTGAACTTGGGTCATACGTTTGGTCACGCAATAGAAACTGGGGTTGGCTATGGCCAGTGGCTTCATGGAGAGGCTGTTGCAGCTGGCACGGTGATGGCTGTTGACATGTCATACCGCCTTGGTTGGATTGATGATTCTATTGTGAAGCGAGTTGGAGACATTTTAAAACAGGCAAAGTTACCTACTTGCCCTCCTGAAACCGTGACTATGGACATGTTCAAATCTGTCATGGCGGTTGATAAGAAGGTGGCAGATGGGTTGCTAAGGCTAATCCTTTTAAAGGGTCCTCTAGGTAATTGCGTTTTCACAGGGGATTATGACAGAAAATCCCTAGACGATACGCTTCGTGCATTCTGTAAATCCTGA 1302 0.4416 MVSASSLSHLSLSLSSSSPFLHKPKFNYPTKNNLHFNPKLVSFSNTKRIYATSSQVMNPSLSKTDSAVPTTVDVDLGDRSYPIYIGSGLLHQPHLLQRHVHGRRVLVVTNTTVAPLYLDKVVHALTTENQNVSVESVILPDGEQYKNMDTLMKVFDKAIESRLDRRSTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPERELASGFAEVIKYGLIRDAEFFEWQEKNMHALLARDPNALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGVGYGQWLHGEAVAAGTVMAVDMSYRLGWIDDSIVKRVGDILKQAKLPTCPPETVTMDMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKSLDDTLRAFCKS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1477 433 Gene3D - 243 433 - -
Lal23g1477 433 Hamap 3-dehydroquinate synthase [aroB]. 69 431 IPR016037 GO:0003856|GO:0005737|GO:0009073
Lal23g1477 433 Pfam 3-dehydroquinate synthase 137 395 IPR030960 -
Lal23g1477 433 CDD DHQS 80 427 - -
Lal23g1477 433 SUPERFAMILY Dehydroquinate synthase-like 72 421 - -
Lal23g1477 433 Gene3D - 57 242 - -
Lal23g1477 433 PANTHER 3-DEHYDROQUINATE SYNTHASE, CHLOROPLASTIC 68 429 - -
Lal23g1477 433 TIGRFAM aroB: 3-dehydroquinate synthase 81 421 IPR016037 GO:0003856|GO:0005737|GO:0009073
Lal23g1477 433 PANTHER 3-DEHYDROQUINATE SYNTHASE 68 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1477 Lal-Chr23 15095295 15098766 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1477 K01735 - gmx:100806628 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1477 23 15095295 15098766 Lal23g1477 23 15095295 15098766 ECH
Lal16g0129 16 768848 774963 Lal23g1477 23 15095295 15098766 LSH