Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0129 ATGTCTTCTTCTTCTTCTACCCTCTCCCATCTCTCTCTTTCTCTCTCCTCCTCCTCCTTCATTCACAAACCTAACTTCCTCTATCCCACCACCATTCACTATTTACATTTTAACCCAAAGTTCGTTTCTTTATCTACCAAAAGAACCATATGCGCTTCTTCTTCTTCTTCTTCTTCTCAACTTATGGACCCATTTCTATCGAAAACTCAACCTCCAATTCCGACCACTGTCCACGTTGATTTGGGCGATCGGAGCTATCCCATTTACATCGGATCCGGCCTCCTTAATCAACCACATCTTCTCCAGAGGCATGTCCATGGCAAGAGGGTCCTGGTGGTTACTAATACCACGGTTGCACCACTGTATCTAGACAAAGTTGTTGATGCTTTAACAAGGGGTAACCAAAATGTTTCTGTCGAGAGTGTAATCTTGCCAGATGGTGAGCAGTACAAGGACATGGATACTCTTATGAAAGTCTTTGACAAGGCCATCGAGTCACGATTGGATCGGCGCAGTACATTTGTTGCCCTTGGAGGTGGTGTGATTGGTGACATGTGTGGCTTTGCTGCTGCTTCCTTCCTACGTGGTGTTAACTTTATTCAGATTCCTACGACTGTTATGGCACAGGTTGATTCTTCGGTTGGTGGTAAAACTGGGATAAACCATCACCTTGGAAAGAACCTGATCGGTGCTTTTTACCAACCTCAGTGTGTGCTTATAGACACAGACACATTAAATACATTACCAGAAAGGGAACTGGCATCAGGATTTGCAGAGGTTATAAAGTATGGGCTCATTAGGGATGCAGATTTTTTTGAGTGGCAGGAGAAAAATATCCACGCATTAATGGCAAGAGATCCTAATGCCCTGGCATATGCGATAAAGCGATCATGTGAGAACAAGGCTGAGGTTGTGTCCTTGGATGAGAAGGAAAGTGGACTGAGGGCAACATTGAACTTGGGTCATACATTTGGTCATGCAATAGAAACTGGGGTTGGCTATGGCCAGTGGCTTCATGGAGAGGCTGTTGCAGCTGGCACGGTAATGGCTGTTGACATGTCATACCGCCTAGGTTGGATCGATGATTCTATAGTGAAGCGAGTTGGAGAGATTTTAAAACAGGCTAAGTTACCTACTACCCCTCCTGAAACCGTGACCATGGACATGTTTAAATCTGTCATGGCGGTTGATAAGAAGGTGGCAGATGGGTTGCTAAGGCTTATCCTTCTGAAGGGTCCTCTAGGTAATTGTGTTTTCACAGGGGATTATGACAGAAAAGCCCTAGATGATACCCTTGGTGCATTCTTACAAGCTTCTCTACAATTCACTTGTGAGATGAGCGCTTCTAGGTTCATCAAATGTGTCACTGTTGGGGATGGAGCTGTCGGCAAAACTTGTTTGCTAATTTCTTATACCAGCAACACTTTCCCCACGGATTATGTGCCAACTGTTTTTGACAATTTCAGCGCAAACGTGGTTGTCAATGGAAGCATTGTTAATCTGGGTTTGTGGGACACTGCTGGACAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGACGTTTTCATACTGGCTTTCTCGCTCATAAGCAAGGCCAGTTATGAAAATGTGTCCAAAAAGTGGATTCCCGAGTTGAAGCATTATGCACCTGGTGTCCCCATAATTTTGGTCGGCACAAAACTTGATCTTCGGGATGATAAGCAGTTCTGTATTGACCATCCTGGTGCCGTGCCCATTACCGCAGCTCAGGGAGAAGAGCTTAGGAAGCTGATTAATGCACCCGCTTACATCGAATGCAGCTCAAAAACGCAGGAGAATGTGAAAGGAGTCTTCGATGCAGCCATAAGAGTTGTGCTTCAACCACCAAAGCAGAAGAAAAAGAAGAATAAAGCACAAAAGGCGTGTTCAATATTAAGTTGGAATCTGGGTGTTTGTCCTGCAAACACTGTAGATCTCCTTGAAGCATAA 1980 0.447 MSSSSSTLSHLSLSLSSSSFIHKPNFLYPTTIHYLHFNPKFVSLSTKRTICASSSSSSSQLMDPFLSKTQPPIPTTVHVDLGDRSYPIYIGSGLLNQPHLLQRHVHGKRVLVVTNTTVAPLYLDKVVDALTRGNQNVSVESVILPDGEQYKDMDTLMKVFDKAIESRLDRRSTFVALGGGVIGDMCGFAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHHLGKNLIGAFYQPQCVLIDTDTLNTLPERELASGFAEVIKYGLIRDADFFEWQEKNIHALMARDPNALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGVGYGQWLHGEAVAAGTVMAVDMSYRLGWIDDSIVKRVGEILKQAKLPTTPPETVTMDMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLGAFLQASLQFTCEMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPGAVPITAAQGEELRKLINAPAYIECSSKTQENVKGVFDAAIRVVLQPPKQKKKKNKAQKACSILSWNLGVCPANTVDLLEA 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0129 659 SMART ras_sub_4 449 625 - -
Lal16g0129 659 SUPERFAMILY Dehydroquinate synthase-like 76 427 - -
Lal16g0129 659 Hamap 3-dehydroquinate synthase [aroB]. 74 436 IPR016037 GO:0003856|GO:0005737|GO:0009073
Lal16g0129 659 Gene3D - 64 247 - -
Lal16g0129 659 PRINTS Transforming protein P21 ras signature 452 473 - -
Lal16g0129 659 PRINTS Transforming protein P21 ras signature 475 491 - -
Lal16g0129 659 PRINTS Transforming protein P21 ras signature 492 514 - -
Lal16g0129 659 PRINTS Transforming protein P21 ras signature 554 567 - -
Lal16g0129 659 PRINTS Transforming protein P21 ras signature 600 622 - -
Lal16g0129 659 TIGRFAM aroB: 3-dehydroquinate synthase 86 425 IPR016037 GO:0003856|GO:0005737|GO:0009073
Lal16g0129 659 ProSiteProfiles small GTPase Rab1 family profile. 447 659 - -
Lal16g0129 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 623 IPR027417 -
Lal16g0129 659 SMART ran_sub_2 457 657 - -
Lal16g0129 659 PANTHER 3-DEHYDROQUINATE SYNTHASE, CHLOROPLASTIC 74 433 - -
Lal16g0129 659 TIGRFAM small_GTP: small GTP-binding protein domain 452 616 IPR005225 GO:0005525
Lal16g0129 659 PANTHER 3-DEHYDROQUINATE SYNTHASE 74 433 - -
Lal16g0129 659 Pfam Ras family 453 623 IPR001806 GO:0003924|GO:0005525
Lal16g0129 659 SMART rab_sub_5 452 625 - -
Lal16g0129 659 Pfam 3-dehydroquinate synthase 142 400 IPR030960 -
Lal16g0129 659 Gene3D - 248 438 - -
Lal16g0129 659 Gene3D - 450 637 IPR027417 -
Lal16g0129 659 CDD DHQS 85 432 - -
Lal16g0129 659 CDD Rop_like 451 623 - -
Lal16g0129 659 ProSiteProfiles small GTPase Rho family profile. 445 622 - -
Lal16g0129 659 SMART rho_sub_3 454 625 IPR001806 GO:0003924|GO:0005525
Lal16g0129 659 ProSiteProfiles small GTPase Ras family profile. 447 642 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0129 Lal-Chr16 768848 774963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0129 452 625 EF-hand Containing Proteins AT5G27540 25.862 7.32e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0129 K01735 - gmx:100806628 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0129 16 768848 774963 Lal23g1477 23 15095295 15098766 LSH