LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal23g1475	ATGGAGAAGAGAATAACTTTGGTTTCAAAGTGTCTATTTGTTTTCCTCTTTCTTTGTTTACATGATACAGTAGTTTCTGCCAAGAACAAGTACAAAACTGGTGCTGGTGTTGTGCCACACAAATTGAATGTTCATCTTGTTCCCCATTCTCATGATGATGTTGGTTGGCTAAAAACCGTCGACCAATACTATGTTGGGTCTAACTATAGTATTCAGAATGCATGTATTGAGAATGTGCTGGACTCAGTGGTTATATCCCTGCAACGTGATAGAAACAGAAAGTTTGTGTATGCCGAGATGGCATATTTCCATCGATGGTGGGTTGAACAAAGTGTTGAAACACAAGCACAAGTGAGAAAGCTTGTGGATTCTGGGCAGCTAGAATTTGTAAATGGTGGTTGGTGCATGCATGATGAAGCCACCACACACTACATAGACATGATTGATCAAACAACTCTTGGTCATCGCTTCATCAAAGAACAATTCGATAAGACCCCTCGTGCAGGGTGGCAAATTGATCCATTTGGTCATTCTGCTGTTCAAGCTTACCTACTTGGTGCTGAGCTTGGATTTGAATCTGTACATTTTGCTAGGATTGATTATCAAGATAGAGATAAGCGCAAAGTTGATAAGACCCTTGAAGTGGTGTGGCGTGGGTCCAAAACTTTTGGTTCTTCAGCTCAGATTTTTGCTAATGCTTTTCCTGAGCGTTATGGTCCTCCAGATGGTTTTCAATTTGAAGTTTCCACTGATTTTGAATCTCTACAGGATGATCCCCTTCTATTCGATTACAATGTTGAACAGCGAGTTCAGGACTTTATTGATGCAGCTATTATACAAGCAAATGTGACTAGGACGAACCATATCATGTGGACAATGGGTGGTGATTTTCAGTACCAATATGCAGAATCTTGGTTCAAGCAAATGGATAAACTAATTCACTATGTTAATAAGGATGGCAGAGTTAATGCTCTATACTCTACTCCATCTATTTACACGGATGCGAAAAATGCAGCAACTCAATTATGGCCCCTGAAAACTCATGATTACTTCCCGTATGCTGATAAACCAGATGCTTATTGGACTGGCTATTTCACTAGTCGCCCAACGCTTAAGGGATATGTTAGGATGCTGAGTGGATATTATTTGGCGGCACGTCAACTTGAGTATTTGGCAGGAAAGAAATCCGGTAGTGATCACACTACTTCTCACCTTGGAGATGCTCTTGGAATTGCACAGCACCATGATGCTGTCACTGGCACTGCAAAACAACATACAACTAATGACTATGCTAAAAGGCTGGCTATTGGAGCCTCAAAGGCTGAAGCTGTTATTAGTTCTTCTTTGGCTTGTCTTGCTAGCAAGAAATCCAAGGTGAAATGCTCAGCACCTGCCTCAGCATTTTCTCAGTGTCAATTACTCAATATCAGTTACTGCCCCTCAACAGAAGACAACATTCCAGAAGCAAAGAGTTTGATATTAGTTGTGTACAACTCATTGGGATGGAACCGAACTGATATGATCAGAATACCAGTAAATGATGCTAAGCTTGTAGTCAAAGATTCAATGGGATATAACCTTGAAACCCAATATGTTCATGTGGATAATGTTACAGCAAATTTAAGAAGCCTCTATGTCAAAGCCTATGTGGGATTTTCGCCAAAACAAGCCCCAAAATACTGGCTTCTGTTTCAGGCTTCTGTACCACCACTTGGATGGAGTACATACTTCATTTCTAGAGCACCAGGAAAAGGCAAAAGGAGAAAGGGAGTTCACAGAGAGCTCAACTTGAAGAAAAACGAGTCCATTGAAATAGGACAAGGAAATTTAAAGGTGTCATTTTCTTCAGAGTCTGGACAACTCACAAGAATGTATAATTCCAGGACTGGAGTTGATATGCCAATTAAGCAAAATTATCTCTGGTATAATTCTTCTATTGTATCCTTTGGTAAGCCTTCTGGTGCATACTTATTCCACCCTGATGGTCCTCCAAAAGTTGCTTCAAAATCAGTGCCCTTAAAGGTAATTCGGGGACCACTAGTTGATGAGGTTCATCAGAACTTTAGTTCTTGGATTTATCAGGTTACTAGGATTTACAGGGACAAAGAGCATGCTGAAATTGAATACACTATTGGTCCAATTCCTATGGAGGATGGTGTTGGGAAAGAGGTGATCTCACAAATGACAACAAATATGGTTACAAAGAAGGAGTTTTATACCGACTCTAACGGAAGAGATTTTCTGAAAAGGGTTCGAGATTATAGGGAGGATTGGCCCCTTAATGTTGTCCAACCAGTAGCCGGAAACTATTATCCGCTAAATCTTGGAATTTATATCGAGGATACGGAATCTGAATTCTCAGTCTTAGTTGATCGTGCCACTGGTGGAGCCAGCATCAAAGATGGTGAAGTGGAACTAATGCTTCATAGGCGCCTATTATATGATGACGGCGAAGGGGTAGATGAAGTACTTGATGAACAAGTTTGTGTAAATGACACATGTGAAGGACTAACTGTAAGAGGAAATTATTATATGAGCCTTCACAAACTTGGAGGTGGTTCACGTTGGAGAAGGACAACTGCTCAGGAAATTTATTCACCACTCTTATTGGCTTTTACATATGAGGACTTGGGAAATTGGAAGTCCTCTCATTTGACAAAAGGAACTGTGATGGACCCAAATTACACCTTGCCTCCTAATGTTGCTCTCATAACTCTTGAGGAGTTGGAAGATGGAAGAGTGCTTCTTCGTTTAGCTCATCTATATGAGGCTGGTGAAGATGCTGAGTATTCAAGTTTGACTAAAGTTGAATTGAAGAAAATGTTTGTGACAAAAAAGATAAAGAAGGTGGTGGAAGTAAGTTTATCAGCAAACCAAGAGAAAACAAAAATGAAGAAGAAGAAGAAGACATGGAAGGTTGAAGGTGACAAAGAACAAGAACCTCAACCAATTAGAGGTGGTCCTGTCAGTACACACAATTTTGTTGTTGAGCTTGGTCCCATGGAAATACGTACTTTCCTCTTGAAATTTTAA	3033	0.4026	MEKRITLVSKCLFVFLFLCLHDTVVSAKNKYKTGAGVVPHKLNVHLVPHSHDDVGWLKTVDQYYVGSNYSIQNACIENVLDSVVISLQRDRNRKFVYAEMAYFHRWWVEQSVETQAQVRKLVDSGQLEFVNGGWCMHDEATTHYIDMIDQTTLGHRFIKEQFDKTPRAGWQIDPFGHSAVQAYLLGAELGFESVHFARIDYQDRDKRKVDKTLEVVWRGSKTFGSSAQIFANAFPERYGPPDGFQFEVSTDFESLQDDPLLFDYNVEQRVQDFIDAAIIQANVTRTNHIMWTMGGDFQYQYAESWFKQMDKLIHYVNKDGRVNALYSTPSIYTDAKNAATQLWPLKTHDYFPYADKPDAYWTGYFTSRPTLKGYVRMLSGYYLAARQLEYLAGKKSGSDHTTSHLGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASKAEAVISSSLACLASKKSKVKCSAPASAFSQCQLLNISYCPSTEDNIPEAKSLILVVYNSLGWNRTDMIRIPVNDAKLVVKDSMGYNLETQYVHVDNVTANLRSLYVKAYVGFSPKQAPKYWLLFQASVPPLGWSTYFISRAPGKGKRRKGVHRELNLKKNESIEIGQGNLKVSFSSESGQLTRMYNSRTGVDMPIKQNYLWYNSSIVSFGKPSGAYLFHPDGPPKVASKSVPLKVIRGPLVDEVHQNFSSWIYQVTRIYRDKEHAEIEYTIGPIPMEDGVGKEVISQMTTNMVTKKEFYTDSNGRDFLKRVRDYREDWPLNVVQPVAGNYYPLNLGIYIEDTESEFSVLVDRATGGASIKDGEVELMLHRRLLYDDGEGVDEVLDEQVCVNDTCEGLTVRGNYYMSLHKLGGGSRWRRTTAQEIYSPLLLAFTYEDLGNWKSSHLTKGTVMDPNYTLPPNVALITLEELEDGRVLLRLAHLYEAGEDAEYSSLTKVELKKMFVTKKIKKVVEVSLSANQEKTKMKKKKKTWKVEGDKEQEPQPIRGGPVSTHNFVVELGPMEIRTFLLKF	1010

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal23g1475	1010	MobiDBLite	consensus disorder prediction	965	986	-	-
	Lal23g1475	1010	PANTHER	ALPHA-MANNOSIDASE	10	1010	-	-
	Lal23g1475	1010	Gene3D	Glycoside hydrolase family 38, central domain	402	459	IPR037094	GO:0004559\|GO:0006013
	Lal23g1475	1010	Gene3D	-	889	1010	-	-
	Lal23g1475	1010	Pfam	Glycosyl hydrolases family 38 N-terminal domain	43	354	IPR000602	GO:0004559\|GO:0006013
	Lal23g1475	1010	Pfam	Alpha mannosidase middle domain	359	452	IPR015341	GO:0004559\|GO:0006013
	Lal23g1475	1010	SUPERFAMILY	Galactose mutarotase-like	468	1010	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Lal23g1475	1010	Pfam	Glycosyl hydrolases family 38 C-terminal domain	605	817	IPR011682	GO:0004559\|GO:0006013
	Lal23g1475	1010	CDD	GH38N_AMII_LAM_like	42	318	-	-
	Lal23g1475	1010	Gene3D	-	602	866	-	-
	Lal23g1475	1010	Gene3D	-	470	581	IPR013780	-
	Lal23g1475	1010	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	900	1007	IPR041147	-
	Lal23g1475	1010	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	359	460	IPR028995	-
	Lal23g1475	1010	Gene3D	Glycoside hydrolase family 38, central domain	323	401	IPR037094	GO:0004559\|GO:0006013
	Lal23g1475	1010	SMART	Alpha_mann_mid_2	359	434	IPR015341	GO:0004559\|GO:0006013
	Lal23g1475	1010	SUPERFAMILY	Glycoside hydrolase/deacetylase	31	357	IPR011330	GO:0005975
	Lal23g1475	1010	PANTHER	ALPHA-MANNOSIDASE	10	1010	-	-
	Lal23g1475	1010	Gene3D	Glycoside hydrolase 38, N terminal domain	42	322	IPR027291	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal23g1475	Lal-Chr23	15079513	15088668	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal23g1475	7	963	Glycoside Hydrolase	AT3G26720	58.014	0.0	1174

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal23g1475	K01191		-	gmx:100806041	1585.47

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal23g1475	23	15079513	15088668	Lal23g1475	23	15079513	15088668	ECH
	Lal23g1475	23	15079513	15088668	Lal16g1827	16	17387882	17399250	PCT