Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1827 ATGAGAAACACAAAGACTTTAGTAGCAGAGTCTCTCTCTGCTTTTCTCTTACTTTGTTTCTATGGCATTCTAGTCAATGCTAAATACATAAACTATGATACTAGCTCTAATATAGTTGAAGGAAAATTGAATATTCACCTTGTACCTCATTCTCATGATGATGTTGGTTGGTTGAAAACTATTGATCAATACTATGTTGGATCAAACAATAGTATTCAGGGTGCATGTATTGAAAATGTTCTGGATTCACTGGTTGTTGCTCTTCATAAAGATCCAAATAGAAAGTTTGTGTTTGCTGAGATGGCATTTTTCCATAGATGGTGGGTAGAACAAAGTCCAGAAACACAAAAACTAGTTAAAAAGCTTGTGGATGCTGGGCAACTAGAATTCATAAATGGTGGATGGTGTATGCATGATGAAGCCACAACACACTACATAGACATGATTGACCAAACCACTTTGGGTCATGGCTTTATCAAGGATCAGTTTAACAAAACCCCTCTTGCTGGATGGCAAATTGATCCCTTTGGACATTCTGCTGTACAGGCTTATCTACTTGGTGCAGAGCTTGGGTTTGAATCAGTGCACTTTGCTCGGATTGATTATCAGGATAGAGCTAAGCGCAAAGGTGATAAGTCTCTCGAAGTTGTGTGGCGCGGGTCAAGAACATTTGGTTCTTCAGCTCAGATTTTTGCCAACGCGTTTCCCGTTCATTATAGTGCTCCAACCGGTTTTAATTTTGAAGTCGATAGTAATGATCCTCCATTACAGGATGATCCTCTTCTTTTCGATTACAATGTTGAACAGCGTGTCCAGGACTTTATTGACGCTGCTACTACCCGTGAAAATGTGACAAGGACAAACCATATAATGTTTACAATGGGTGATGATTTCCAATACCAATATGCAGAAACTTGGTTCAAACAAATGGATAAATTAATTCACTATGTTAATAAGGATGGTAGAGTGAATGCCTTATATTCTACTCCATCGATTTACACCGATGCAAAGAATGCTGCAAATATATCGTGGCCACTGAAAACTGACGATTACTTTCCGTATGCAGATGGACCATTTTCCTATTGGACAGGATTTTTCACTAGTCGCCCTGCGCTTAAGGGATATGTTAGGTTGCTAAGTGGATACTATTTGGCAGCGCGCCAACTTGAATTTTTTGCTGGAAAGAGTTCGACTACATCTCATACTCTTGAACTAGGCGATGCTCTAGGAATTGCGCAGCACCACGATGCTGTCTCTGGCACTTCTAAACAGCATACAACTAACGACTATGCCAAACGACTGGCTATTGGAGCCTCAAAGGCTGAAGCAGTAGTTAGTTCTTCTTTGGCTTGTCTTTCTAGCAAGCAATTAGGTAATCAATGTTCAACACCTGCATCAGCATTTTCTCAGTGCCAATTACTGAATATAAGTTACTGCCCTCCTACAGAAGACAATATTCCAGAAACCAAGAGTTTGGTAGTAGTGGTTTATAACCCACTAGGATGGAACCGTACTGATATCGTTAGAATACCGGTTAATGATGTGAATCTTGTTGTCAAAGATTCATTTGGCAATAACATTGAAGCACAGTATGTCGATATCGATGATGTTACGACAAATTTAAGAAAATTCTATGTAAAGGCCTACTTGGGTCTGTCACCAAAACAAGCCCCGAAGTATTGGCTTCTGTTTCAGGTCTCAGTACCTCCACTTGGATGGAGTACTTACTTCTTGTCTAAAGCTGTTGGAAATGGAAAAAGTAGAAATGGATCTACCTCGCACCGCAGGGCTCAGAATGGTGACAACATTGACATAGGACCAGGGAATCTAAAGTTGTCATTTTCTTCAACCTCGGGACAACTCAAACGGATGTATAATTCCAGAACTGGAGTTGATATACCAATTCAGCAAAGCTATCTGTGGTATGGTTCTAGTGAGGGTGATATTTCTAATACTCAGGCTTCTGGCGCGTATATCTTTCGGCCTAATGGATCCCCTCCAACTGTTGTTTCAAGATCAGTTCCGTACAAAGTTATCCGTGGACCGATAGTTGATGAGATTCATCAGAAGTTTAGCTCTTGGATTTACCAGGTGACTAGGCTTTACAAAGACAAAGATCATGCTGAAATTGAATTCACTATTGGTCCAATTCCTATTGACGATGGTGTTGGAAAAGAGGTGATCACACGATTGACAACAAATATGGTTACAAACAAGGAGTTTTATACTGATTCTAATGGAAGAGATTTTCTGAAACGGGTTCGAGATCATAGGGAAGATTGGCCGCTTCAAGTTACTCAACCTGTAGCAGGAAACTATTATCCACTTAATCTTGGAATTTATACAAAGGATAAGAATTCTGAACTCTCAGTTTTAGTTGATCGTGCCACTGGTGGAGCCAGCATCAAAGACGGTGAGGTAGAACTTATGCTTCACAGGCGTATTCTCCACGATGATGGTAGAGGAGTAGGAGAAGAACTCGACGAACAAGTTTGCTTGAACAACATTACATGTGAAGGACTAACAGTAAGAGGAAACTATTATATCAGCATTGACAAGATCGGAGAAGGCTCACGCTGGCGCCGTACAACTGGTCAGGAAATTTACTCACCGATATTGTTGGCTTTTTCGCACGAGAACTTGGAGAATTGGAAGTCCTCTCATTTGAGCAAGGGAACTCTTATGGATCCAAATTACAACTTGCCTCCTAATGTTGCTCTTATAACTCTTCAGGAGTTAGATGATGGAATTGTGCTTCTCCGTTTGGCACATCTATATGAGATAAGTGAAGATGCTGAGTATTCAACTTTGGCCAAAGTTGAACTAAAAAAGCTCTTTGCCACAAAAACTATAAATGAGTTGAAAGAAGTAAATTTATCAGCTAACCAAGAGAAGTCAAAAATGAGGAAAATGATATGGAAAGTTGAAGGGGACAAAGGGCAAGAAACTCAAGTAGTTAAGGGTGGCCCAGTTAATAGTCCTGGTTATGTTCTTGAGCTTGGTCCCATGGAAATACGAACATTCCACTTGAAATTTTGA 3039 0.4014 MRNTKTLVAESLSAFLLLCFYGILVNAKYINYDTSSNIVEGKLNIHLVPHSHDDVGWLKTIDQYYVGSNNSIQGACIENVLDSLVVALHKDPNRKFVFAEMAFFHRWWVEQSPETQKLVKKLVDAGQLEFINGGWCMHDEATTHYIDMIDQTTLGHGFIKDQFNKTPLAGWQIDPFGHSAVQAYLLGAELGFESVHFARIDYQDRAKRKGDKSLEVVWRGSRTFGSSAQIFANAFPVHYSAPTGFNFEVDSNDPPLQDDPLLFDYNVEQRVQDFIDAATTRENVTRTNHIMFTMGDDFQYQYAETWFKQMDKLIHYVNKDGRVNALYSTPSIYTDAKNAANISWPLKTDDYFPYADGPFSYWTGFFTSRPALKGYVRLLSGYYLAARQLEFFAGKSSTTSHTLELGDALGIAQHHDAVSGTSKQHTTNDYAKRLAIGASKAEAVVSSSLACLSSKQLGNQCSTPASAFSQCQLLNISYCPPTEDNIPETKSLVVVVYNPLGWNRTDIVRIPVNDVNLVVKDSFGNNIEAQYVDIDDVTTNLRKFYVKAYLGLSPKQAPKYWLLFQVSVPPLGWSTYFLSKAVGNGKSRNGSTSHRRAQNGDNIDIGPGNLKLSFSSTSGQLKRMYNSRTGVDIPIQQSYLWYGSSEGDISNTQASGAYIFRPNGSPPTVVSRSVPYKVIRGPIVDEIHQKFSSWIYQVTRLYKDKDHAEIEFTIGPIPIDDGVGKEVITRLTTNMVTNKEFYTDSNGRDFLKRVRDHREDWPLQVTQPVAGNYYPLNLGIYTKDKNSELSVLVDRATGGASIKDGEVELMLHRRILHDDGRGVGEELDEQVCLNNITCEGLTVRGNYYISIDKIGEGSRWRRTTGQEIYSPILLAFSHENLENWKSSHLSKGTLMDPNYNLPPNVALITLQELDDGIVLLRLAHLYEISEDAEYSTLAKVELKKLFATKTINELKEVNLSANQEKSKMRKMIWKVEGDKGQETQVVKGGPVNSPGYVLELGPMEIRTFHLKF 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1827 1012 Gene3D Glycoside hydrolase 38, N terminal domain 43 323 IPR027291 -
Lal16g1827 1012 CDD GH38N_AMII_LAM_like 43 319 - -
Lal16g1827 1012 SMART Alpha_mann_mid_2 360 434 IPR015341 GO:0004559|GO:0006013
Lal16g1827 1012 Pfam Glycosyl hydrolases family 38 N-terminal domain 44 355 IPR000602 GO:0004559|GO:0006013
Lal16g1827 1012 Gene3D - 602 870 - -
Lal16g1827 1012 SUPERFAMILY Galactose mutarotase-like 467 1012 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal16g1827 1012 Pfam Alpha mannosidase middle domain 360 452 IPR015341 GO:0004559|GO:0006013
Lal16g1827 1012 Coils Coil 951 971 - -
Lal16g1827 1012 Pfam Glycosyl hydrolases family 38 C-terminal domain 606 821 IPR011682 GO:0004559|GO:0006013
Lal16g1827 1012 MobiDBLite consensus disorder prediction 585 599 - -
Lal16g1827 1012 MobiDBLite consensus disorder prediction 585 604 - -
Lal16g1827 1012 Gene3D Glycoside hydrolase family 38, central domain 324 401 IPR037094 GO:0004559|GO:0006013
Lal16g1827 1012 Gene3D - 470 581 IPR013780 -
Lal16g1827 1012 SUPERFAMILY Glycoside hydrolase/deacetylase 31 358 IPR011330 GO:0005975
Lal16g1827 1012 SUPERFAMILY Families 57/38 glycoside transferase middle domain 360 456 IPR028995 -
Lal16g1827 1012 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 904 1008 IPR041147 -
Lal16g1827 1012 PANTHER ALPHA-MANNOSIDASE 14 1012 - -
Lal16g1827 1012 Gene3D - 894 1012 - -
Lal16g1827 1012 PANTHER ALPHA-MANNOSIDASE 14 1012 - -
Lal16g1827 1012 Gene3D Glycoside hydrolase family 38, central domain 402 457 IPR037094 GO:0004559|GO:0006013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1827 Lal-Chr16 17387882 17399250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1827 7 955 Glycoside Hydrolase AT3G26720 59.368 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1827 K01191 - gmx:100806748 1738.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1827 16 17387882 17399250 Lal16g1827 16 17387882 17399250 ECH
Lal23g1475 23 15079513 15088668 Lal16g1827 16 17387882 17399250 PCT