Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1427 ATGAAGCATTTTGCTTTTGTTCTTCTTTTGGCTATTTTGGTCCACCCTGAGTGTTTCAATGTCAGTGTAGAAGCTGTGGATGGTTTTGTCCGAACAAGAGGGTTCCATTTCCTGTTGAATGGAAACCCTTACTATGCAAGTGGCTTCAATGCATACTGGTTAATGTATACAGCTTCTGACCCATCTCAGAGATTCAAAGTTTCTGCTGCCTTCCATGAAGCAAGTAGCCATGGCCTCACTGTTGCTAGAACTTGGGCATTCAGTGATGGTGGTTATAGACCCTTGCAATATTCTCCTGGCTTCTATAATGAGCAAATGTTTAAGGGGTTAGATTTTGTTATAGCTGAGGCAAGGAAGTATGGGATTAAGCTCATACTGAGCTTGGTGAACAATTATGACAATTTTGGAGGGAAGAAACAGTATATAAACTGGGCAAGAAATCATGGGCAGTACCTGGCATCAGATGATGATTTCTTCAGGAATCCTGTTGTTAAGGGTTTCTACACAAACCATGTCAAGACTGTTCTCAACAGATACAACAGTTTTACGGGTATGCATTACAGAGATGATCCAACAATCATGGCATGGGAGCTTATGAATGAGCCTAGGTGCACATCAGATCCTTCTGGGAGGACTATTCAGGCTTGGATCACGGAAATGGCTTCCTTTGTGAAATCCATAGACAGTAATCACTTATTGGAGGCTGGGCTAGAGGGCTTTTATGGACAATCAACACCTCAAAGAAAGAGACTAAACCCTGGTTTTGATATAGGAACAGACTTCATTGCAAATAATCGAATTCTAGGCATTGATTTTGCAACACTTCATTGTTATCCTGACCAATGGGTATCAGGCTCAAATGAGCAATATCAACTTGCATTCTTGAACAACTGGCTCAGTGCTCACTTCCTAGATGCACAATATGCTATAAGGAAGCCAATACTTGTAGCAGAATTTGGGAAATCATTTAAAGACTCAGGTTATAACACAAACCAGAGGGATCAACTTTTCAACACTGTTTACTACAAGATATACTCATCTGCTAAGAGAGGAGGGCCGGCAGGTGGAGCGCTCTTCTGGCAGCTTCTTACTGAGGGCATGGAATCTTTCGACGATGGCTATGGAGTAATGCTTGGCCAAAGTTCATCCACTGCAAATGTGATTGCTCAGCATTCACATAAATTGTACCAAATTCGTAAGATTTTTGGAAGGTTAGCCAATGCATTGCGATGGAAGAGGGACAGAGCTAACCGAGGCAAGCACATCGGAAACTAA 1275 0.4204 MKHFAFVLLLAILVHPECFNVSVEAVDGFVRTRGFHFLLNGNPYYASGFNAYWLMYTASDPSQRFKVSAAFHEASSHGLTVARTWAFSDGGYRPLQYSPGFYNEQMFKGLDFVIAEARKYGIKLILSLVNNYDNFGGKKQYINWARNHGQYLASDDDFFRNPVVKGFYTNHVKTVLNRYNSFTGMHYRDDPTIMAWELMNEPRCTSDPSGRTIQAWITEMASFVKSIDSNHLLEAGLEGFYGQSTPQRKRLNPGFDIGTDFIANNRILGIDFATLHCYPDQWVSGSNEQYQLAFLNNWLSAHFLDAQYAIRKPILVAEFGKSFKDSGYNTNQRDQLFNTVYYKIYSSAKRGGPAGGALFWQLLTEGMESFDDGYGVMLGQSSSTANVIAQHSHKLYQIRKIFGRLANALRWKRDRANRGKHIGN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1427 424 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 1 418 - -
Lal23g1427 424 Pfam Cellulase (glycosyl hydrolase family 5) 47 340 IPR001547 GO:0004553|GO:0071704
Lal23g1427 424 PANTHER - 1 418 IPR045053 GO:0004553
Lal23g1427 424 Gene3D Glycosidases 25 399 - -
Lal23g1427 424 SUPERFAMILY (Trans)glycosidases 29 388 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1427 Lal-Chr23 14748466 14751782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1427 1 424 Glycoside Hydrolase AT5G66460 65.197 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1427 K19355 - gmx:100784013 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1427 23 14748466 14751782 Lal23g1427 23 14748466 14751782 ECH
Lal16g0160 16 979082 982332 Lal23g1427 23 14748466 14751782 LSH