Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0160 ATGAAGCATTTTGCTTTTGTTCTTCTTTTGGCCATTTTGGTCCACCAGGAGTGTTTCTATGTGAGTGTGGATGCTGTGGATGGTTTTGTCAGAACAAGAGGGATCCACTTCCTGTTGAATGGAAACCCTTACTATGCAAATGGTTTCAATGCATACTGGCTAATGTATACAGCTTCTGATCCATCTCAGAGATTCAAAGTTTCTGCTGCCTTCCATGAAGCAAGTAGCCATAGCCTTACTGTGGCTAGAACTTGGGCATTCAGTGATGGTGGTTACAGACCCTTACAATATTCTCCTGGCTTCTATAATGAACAAATGTTTAAGGGGTTGGATTTTGTTATAGCTGAGGCAAGGAAGTATGGGATAAAGCTCATACTGAGCTTGGTGAACAATTATGACAGCTTTGGAGGGAAGAAGCAGTATGTGAACTGGGCTAGAAGTCATGGACAGTACCTTACATCAGATGATGATTTCTTCAGGAGCCCTGTTGTTAAGGGTTACTACATAAACCATGTTAAGACTGTAATTAATAGATACAACAGCTTTACGGGTATTCATTACAGAGATGATCCCACAATCATGGCCTGGGAGCTTATGAATGAGCCTAGGTGCACATCAGATCCTTCAGGGAGGACTATTCAGTCTTGGATCATGGAAATGGCTTCCTTTGTGAAGTCCATTGACAGGAATCACTTATTGGAGGCTGGTCTAGAAGGGTTTTATGGACAATCAACACCTCAAAGAAAGAGACTGAACCCTGGTTTTGATATAGGAACAGACTTCATTGCAAATAATCGCATCCAAGGCATTGATTTTGCAACAGTCCATTGTTATCCTGACCAATGGGTATCCAGTTCAAATGATCAATATCAACTTGCATTCTTGAACAAATGGCTTAGTTCTCACTTTCTAGATGCACAATATGCTATAAGGAAGCCAATACTTGTAGCAGAGTTTGGAAAATCATTTAAAGACTCTGGTTATAACAAATACCAGAGGGATCAACTTTTCAATACTGTGTACTACAAGATATACTCATCTGCTAAAAGAGGAGGGCCAGCAGGTGGTGCACTCTTCTGGCAGCTTCTTACTGAGGGCATGGAGTCTTTCAATGACGGTTATGGAATCATGCTTGGCCAAAGTTCATCCACTGCGAATGTGATTGCTCAGCAGTCACATAAATTGCACCAAATTCGTAAGATTTTTGGGAGGTTAGCCAATGCGTGGCGATGGAAGAGGGCCAGAGCTAAAAGAGGCAAGCACATTCACTAG 1272 0.4182 MKHFAFVLLLAILVHQECFYVSVDAVDGFVRTRGIHFLLNGNPYYANGFNAYWLMYTASDPSQRFKVSAAFHEASSHSLTVARTWAFSDGGYRPLQYSPGFYNEQMFKGLDFVIAEARKYGIKLILSLVNNYDSFGGKKQYVNWARSHGQYLTSDDDFFRSPVVKGYYINHVKTVINRYNSFTGIHYRDDPTIMAWELMNEPRCTSDPSGRTIQSWIMEMASFVKSIDRNHLLEAGLEGFYGQSTPQRKRLNPGFDIGTDFIANNRIQGIDFATVHCYPDQWVSSSNDQYQLAFLNKWLSSHFLDAQYAIRKPILVAEFGKSFKDSGYNKYQRDQLFNTVYYKIYSSAKRGGPAGGALFWQLLTEGMESFNDGYGIMLGQSSSTANVIAQQSHKLHQIRKIFGRLANAWRWKRARAKRGKHIH 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0160 423 Gene3D Glycosidases 25 399 - -
Lal16g0160 423 SUPERFAMILY (Trans)glycosidases 29 388 IPR017853 -
Lal16g0160 423 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 1 418 - -
Lal16g0160 423 PANTHER - 1 418 IPR045053 GO:0004553
Lal16g0160 423 Pfam Cellulase (glycosyl hydrolase family 5) 68 336 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0160 Lal-Chr16 979082 982332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0160 1 423 Glycoside Hydrolase AT5G66460 66.279 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0160 K19355 - gmx:100784013 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0160 16 979082 982332 Lal23g1427 23 14748466 14751782 LSH